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Bioconductor - GEOexplorer (development version)

GEOexplorer

This is the development version of GEOexplorer; for the stable release version, see GEOexplorer.

GEOexplorer: a webserver for gene expression analysis and visualisation

Bioconductor version: Development (3.22)

GEOexplorer is a webserver and R/Bioconductor package and web application that enables users to perform gene expression analysis. The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https: //www.ncbi.nlm.nih.gov/geo/geo2r/).

Author: Guy Hunt [aut, cre] ORCID: 0000-0002-5217-2678 , Rafael Henkin [ctb, ths] ORCID: 0000-0002-5511-5230 , Alfredo Iacoangeli [ctb, ths] ORCID: 0000-0002-5280-5017 , Fabrizio Smeraldi [ctb, ths] ORCID: 0000-0002-0057-8940 , Michael Barnes [ctb, ths] ORCID: 0000-0001-9097-7381

Maintainer: Guy Hunt <guy.hunt at kcl.ac.uk>

Citation (from within R, enter citation("GEOexplorer")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GEOexplorer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GEOexplorer")
Details biocViews DifferentialExpression, GeneExpression, MicroRNAArray, Microarray, RNASeq, Software, Transcriptomics, mRNAMicroarray Version 1.15.0 In Bioconductor since BioC 3.14 (R-4.1) (4 years) License GPL-3 Depends shiny, limma, Biobase, plotly, enrichR, R (>= 4.1.0) Imports DT, XML, httr, sva, xfun, edgeR, htmltools, factoextra, heatmaply, pheatmap, scales, shinyHeatmaply, shinybusy, ggplot2, stringr, umap, GEOquery, impute, grDevices, stats, graphics, markdown, knitr, utils, xml2, R.utils, readxl, shinycssloaders, car System Requirements URL https://github.com/guypwhunt/GEOexplorer/ Bug Reports https://github.com/guypwhunt/GEOexplorer/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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