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Showing content from https://bioconductor.org/packages/devel/bioc/html/../../bioc/html/../../bioc/html/ChIPseqR.html below:

Bioconductor - ChIPseqR (development version)

ChIPseqR

This is the development version of ChIPseqR; for the stable release version, see ChIPseqR.

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Bioconductor version: Development (3.22)

ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.

Author: Peter Humburg

Maintainer: Peter Humburg <peter.humburg at gmail.com>

Citation (from within R, enter citation("ChIPseqR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ChIPseqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPseqR")
Details biocViews ChIPSeq, Infrastructure, Software Version 1.63.0 In Bioconductor since BioC 2.5 (R-2.10) (15.5 years) License GPL (>= 2) Depends R (>= 2.10.0), methods, BiocGenerics, S4Vectors(>= 0.9.25) Imports Biostrings, fBasics, GenomicRanges, IRanges(>= 2.5.14), graphics, grDevices, HilbertVis, ShortRead, stats, timsac, utils System Requirements URL See More Suggests Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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