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Bioconductor - BiocSet (development version)

BiocSet

This is the development version of BiocSet; for the stable release version, see BiocSet.

Representing Different Biological Sets

Bioconductor version: Development (3.22)

BiocSet displays different biological sets in a triple tibble format. These three tibbles are `element`, `set`, and `elementset`. The user has the abilty to activate one of these three tibbles to perform common functions from the dplyr package. Mapping functionality and accessing web references for elements/sets are also available in BiocSet.

Author: Kayla Morrell [aut, cre], Martin Morgan [aut], Kevin Rue-Albrecht [ctb], Lluís Revilla Sancho [ctb]

Maintainer: Kayla Morrell <kayla.morrell16 at gmail.com>

Citation (from within R, enter citation("BiocSet")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiocSet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocSet")
BiocSet: Representing Element Sets in the Tidyverse HTML R Script Reference Manual PDF NEWS Text Details biocViews GO, GeneExpression, KEGG, Software Version 1.23.0 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License Artistic-2.0 Depends R (>= 3.6), dplyr Imports methods, tibble, utils, rlang, plyr, S4Vectors, BiocIO, AnnotationDbi, KEGGREST, ontologyIndex, tidyr System Requirements URL See More Suggests GSEABase, airway, org.Hs.eg.db, DESeq2, limma, BiocFileCache, GO.db, testthat, knitr, rmarkdown, BiocStyle Linking To Enhances Depends On Me RegEnrich Imports Me sparrow Suggests Me dearseq Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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