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Bioconductor - BiocBook (development version)

BiocBook

This is the development version of BiocBook; for the stable release version, see BiocBook.

Write, containerize, publish and version Quarto books with Bioconductor

Bioconductor version: Development (3.22)

A BiocBook can be created by authors (e.g. R developers, but also scientists, teachers, communicators, ...) who wish to 1) write (compile a body of biological and/or bioinformatics knowledge), 2) containerize (provide Docker images to reproduce the examples illustrated in the compendium), 3) publish (deploy an online book to disseminate the compendium), and 4) version (automatically generate specific online book versions and Docker images for specific Bioconductor releases).

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("BiocBook")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BiocBook")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocBook")
Details biocViews Infrastructure, ReportWriting, Software Version 1.7.0 In Bioconductor since BioC 3.18 (R-4.3) (1.5 years) License MIT + file LICENSE Depends R (>= 4.3) Imports BiocGenerics, available, cli, glue, gert, gh, gitcreds, httr, usethis, dplyr, purrr, tibble, methods, rprojroot, stringr, yaml, tools, utils, rlang, quarto, renv System Requirements URL https://bioconductor.org/packages/BiocBook Bug Reports https://github.com/js2264/BiocBook/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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