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Bioconductor - ReactomeContentService4R

ReactomeContentService4R

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see ReactomeContentService4R.

Interface for the Reactome Content Service

Bioconductor version: 3.19

Reactome is a free, open-source, open access, curated and peer-reviewed knowledgebase of bio-molecular pathways. This package is to interact with the Reactome Content Service API. Pre-built functions would allow users to retrieve data and images that consist of proteins, pathways, and other molecules related to a specific gene or entity in Reactome.

Author: Chi-Lam Poon [aut, cre] , Reactome [cph]

Maintainer: Chi-Lam Poon <clpoon807 at gmail.com>

Citation (from within R, enter citation("ReactomeContentService4R")): Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ReactomeContentService4R")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReactomeContentService4R")
Details biocViews DataImport, Pathways, Reactome, Software Version 1.12.0 In Bioconductor since BioC 3.13 (R-4.1) (3.5 years) License Apache License (>= 2.0) | file LICENSE Depends Imports httr, jsonlite, utils, magick (>= 2.5.1), data.table, doParallel, foreach, parallel System Requirements URL https://github.com/reactome/ReactomeContentService4R Bug Reports https://github.com/reactome/ReactomeContentService4R/issues See More Package Archives

Follow Installation instructions to use this package in your R session.


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