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Bioconductor - pcxnData

pcxnData

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see pcxnData.

Correlation coefficients and p values between pre-defined pathway/gene sets

Bioconductor version: 3.18

PCxN database contains correlation coefficients and p values between pre-defined gene sets within MSigDB H hallmark gene sets, MSigDB C2 CP (Canonical pathways), MSigDB C5 GO BP gene sets and Pathprint respectively, as well as adjusted pathway correlations to account for the shared genes between pathway pairs.

Author: Sokratis Kariotis, Yered Pita-Juarez, Wenbin Wei, Winston Hide

Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>

Citation (from within R, enter citation("pcxnData")): Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pcxnData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pcxnData")
Details See More Suggests pcxn Linking To Enhances Depends On Me pcxn Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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