This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SVAPLSseq.
SVAPLSseq-An R package to estimate the hidden factors of unwanted variability and adjust for them to enable a more powerful and accurate differential expression analysis based on RNAseq dataBioconductor version: 3.10
The package contains functions that are intended for extracting the signatures of latent variation in RNAseq data and using them to perform an improved differential expression analysis for a set of features (genes, transcripts) between two specified biological groups.
Author: Sutirtha Chakraborty
Maintainer: Sutirtha Chakraborty <sutirtha_sutir at yahoo.co.in>
Citation (from within R, entercitation("SVAPLSseq")): Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SVAPLSseq")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SVAPLSseq")Follow Installation instructions to use this package in your R session.
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