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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/wrong__illegal__quals_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/wrong_illegal_quals.cpp Source File

44  bool

modified =

false

;

45  for

(

CFeat_CI

feat_ci(seh); feat_ci; ++feat_ci)

50  bool

changed =

false

;

53

CSeq_feat::TQual::iterator qual_it = new_feat->

SetQual

().begin();

54  while

(qual_it != new_feat->

SetQual

().end())

56  bool

to_delete =

false

;

57  if

((*qual_it)->IsSetQual())

62  if

((*qual_it)->IsSetVal())

64  string

content =

"["

+(*qual_it)->GetQual()+

"="

+(*qual_it)->GetVal()+

"]"

;

70  if

(!prev_value.empty())

79

qual_it = new_feat->

SetQual

().erase(qual_it);

83  if

(new_feat->

SetQual

().empty())

134  bool

modified =

false

;

135  for

(

CFeat_CI

feat_ci(seh); feat_ci; ++feat_ci)

140  bool

changed =

false

;

143

CSeq_feat::TQual::iterator qual_it = new_feat->

SetQual

().begin();

144  while

(qual_it != new_feat->

SetQual

().end())

146  bool

to_delete =

false

;

148  if

((*qual_it)->IsSetVal())

149  value

= (*qual_it)->GetVal();

151  if

((*qual_it)->IsSetQual())

163

qual_it = new_feat->

SetQual

().erase(qual_it);

167  if

(new_feat->

SetQual

().empty())

187  bool

modified =

false

;

188  for

(

CFeat_CI

feat_ci(seh); feat_ci; ++feat_ci)

193  bool

changed =

false

;

196

CSeq_feat::TQual::iterator qual_it = new_feat->

SetQual

().begin();

197  while

(qual_it != new_feat->

SetQual

().end())

199  bool

to_delete =

false

;

200  if

((*qual_it)->IsSetQual())

205  if

((*qual_it)->IsSetVal())

207  string

content =

"["

+(*qual_it)->GetQual()+

"="

+(*qual_it)->GetVal()+

"]"

;

213  if

(!prev_value.empty())

222

qual_it = new_feat->

SetQual

().erase(qual_it);

226  if

(new_feat->

SetQual

().empty())

246  bool

modified =

false

;

247  for

(

CFeat_CI

feat_ci(seh); feat_ci; ++feat_ci)

252  bool

changed =

false

;

255

CSeq_feat::TQual::iterator qual_it = new_feat->

SetQual

().begin();

256  while

(qual_it != new_feat->

SetQual

().end())

258  bool

to_delete =

false

;

259  if

((*qual_it)->IsSetQual())

269

qual_it = new_feat->

SetQual

().erase(qual_it);

273  if

(new_feat->

SetQual

().empty())

294  bool

modified =

false

;

295  for

(

CFeat_CI

feat_ci(seh); feat_ci; ++feat_ci)

300  bool

changed =

false

;

303

CSeq_feat::TQual::iterator qual_it = new_feat->

SetQual

().begin();

304  while

(qual_it != new_feat->

SetQual

().end())

306  bool

to_delete =

false

;

307  if

((*qual_it)->IsSetQual())

318

qual_it = new_feat->

SetQual

().erase(qual_it);

322  if

(new_feat->

SetQual

().empty())

bool IsLegalQualifier(EQualifier qual) const

Test wheather a certain qualifier is legal for the feature.

EQualifier

List of available qualifiers for feature keys.

ESubtype GetSubtype(void) const

static EQualifier GetQualifierType(CTempString qual)

convert qual string to enumerated value

namespace ncbi::objects::

static void RmWrongQuals(CSeq_entry_Handle seh, ICommandProccessor *cmd_processor)

static void RmWrongOrIllegalQuals(CSeq_entry_Handle seh, ICommandProccessor *cmd_processor)

static void IllegalQualsToNote(CSeq_entry_Handle seh, ICommandProccessor *cmd_processor)

static void WrongQualsToNote(CSeq_entry_Handle seh, ICommandProccessor *cmd_processor)

static void RmIllegalQuals(CSeq_entry_Handle seh, ICommandProccessor *cmd_processor)

Undo/Redo interface for editing operations.

virtual void Execute(IEditCommand *command, wxWindow *window=0)=0

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

bool IsSetComment(void) const

Check if a value has been assigned to Comment data member.

bool IsSetQual(void) const

qualifiers Check if a value has been assigned to Qual data member.

void SetComment(const TComment &value)

Assign a value to Comment data member.

const TData & GetData(void) const

Get the Data member data.

const TComment & GetComment(void) const

Get the Comment member data.

TQual & SetQual(void)

Assign a value to Qual data member.

void ResetQual(void)

Reset Qual data member.

where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is orig

const GenericPointer< typename T::ValueType > T2 value

USING_SCOPE(ncbi::objects)

bool s_SpecialRemove(CSeqFeatData::ESubtype subtype, CSeqFeatData::EQualifier qual, const string &value)


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