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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/writedb__lmdb_8hpp_source.html below:

NCBI C++ ToolKit: include/objtools/blast/seqdb_writer/writedb_lmdb.hpp Source File

1 #ifndef OBJTOOLS_WRITERS_WRITEDB__WRITEDB_LMDB_HPP 2 #define OBJTOOLS_WRITERS_WRITEDB__WRITEDB_LMDB_HPP 52 #define DEFAULT_LMDB_MAP_SIZE 500000 53 #define DEFAULT_TAXID_MAP_SIZE 500000 55 #define DEFAULT_LMDB_MAP_SIZE 700000000 56 #define DEFAULT_TAXID_MAP_SIZE 300000000 78 void

InsertVolumesInfo(

const

vector<string> & vol_names,

const

vector<blastdb::TOid> & vol_num_oids);

99 void

x_CommitTransaction();

101 void

x_CreateOidToSeqidsLookupFile();

103 void

x_IncreaseEnvMapSize();

104 void

x_IncreaseEnvMapSize(

const

vector<string> & vol_names,

const

vector<blastdb::TOid> & vol_num_oids);

117 if

(v.

== k.

) {

126 return

< k.

;

131 void

x_Split(vector<SKeyValuePair>::iterator

, vector<SKeyValuePair>::iterator e,

const unsigned int

min_chunk_size);

160 void

x_CommitTransaction();

161 void

x_CreateOidToTaxIdsLookupFile();

162 void

x_CreateTaxIdToOidsLookupFile();

164 void

x_IncreaseEnvMapSize();

171 template

class

valueType>

ncbi::TMaskedQueryRegions mask

This class supports creation of a string accession to integer OID lmdb database.

vector< SKeyValuePair > m_list

unsigned int m_MaxEntryPerTxn

This class supports creation of tax id list lookup files.

vector< SKeyValuePair< blastdb::TOid > > m_TaxId2OidList

vector< SKeyValuePair< Uint8 > > m_TaxId2OffsetsList

unsigned int m_MaxEntryPerTxn

Resource class for `MDB_env*` handles.

SStrictId_Tax::TId TTaxId

Taxon id type.

uint64_t Uint8

8-byte (64-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_XOBJREAD_EXPORT

char * dbname(DBPROCESS *dbproc)

Get name of current database.

const GenericPointer< typename T::ValueType > T2 value

Defines BLAST database access classes.

Defines interface to interact with LMDB files.

const blastdb::TOid kSeqDBEntryNotFound

Int4 TOid

Ordinal ID in BLAST databases.

static bool cmp_key(const SKeyValuePair &v, const SKeyValuePair &k)

SKeyValuePair(TTaxId t, valueType v)

static bool cmp_key(const SKeyValuePair &v, const SKeyValuePair &k)

#define DEFAULT_LMDB_MAP_SIZE

#define DEFAULT_TAXID_MAP_SIZE

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