Implementation for the CWriteDB_Impl class. More...
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Implementation for the CWriteDB_Impl class.
class for WriteDB.
Definition in file writedb_impl.cpp.
◆ CHAR_BUFFER_SIZE #define CHAR_BUFFER_SIZE 256 ◆ INT4_SIZE ◆ TAB_REPLACEMENT ◆ s_AbsMax() ◆ s_CheckDuplicateIds() ◆ s_CheckEmptyLists()Definition at line 561 of file writedb_impl.cpp.
References CConstRef< C, Locker >::GetPointer(), NON_CONST_ITERATE, CRef< C, Locker >::Reset(), s_EditDeflineSet(), and CBlast_def_line_set_Base::Set().
Referenced by s_EditDeflineSet(), CWriteDB_Impl::SetDeflines(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CWriteDB_Impl::x_GetFastaReaderDeflines(), and CWriteDB_Impl::x_SetDeflinesFromBinary().
◆ s_EditDeflineSet() ◆ s_EscapeColon() ◆ s_LimitDeflines()Definition at line 492 of file writedb_impl.cpp.
References set< Key, Compare >::begin(), CSeq_id::BlastRank(), df(), set< Key, Compare >::end(), FindBestChoice(), CBlast_def_line_set_Base::Get(), CConstRef< C, Locker >::GetPointer(), set< Key, Compare >::insert(), CBlast_def_line_set_Base::Set(), set< Key, Compare >::size(), and CBlast_def_line_set::SortBySeqIdRank().
Referenced by CWriteDB_Impl::x_ExtractDeflines().
◆ s_UseFastaReaderDeflines()Definition at line 736 of file writedb_impl.cpp.
References CSeq_id::BestRank(), CConstRef< C, Locker >::Empty(), FindBestChoice(), CBlast_def_line_set_Base::Get(), CBioseq::GetNonLocalId(), CSeq_id_Base::IsLocal(), CSeq_id_Base::IsPir(), CSeq_id_Base::IsPrf(), ITERATE, and NULL.
Referenced by CWriteDB_Impl::x_ExtractDeflines().
◆ USING_SCOPE()Import C++ std namespace.
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