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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/writedb__general_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/blast/seqdb_writer/writedb_general.cpp Source File

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62  if

(packed.

Empty

()) {

66

packed->Insert(

""

, 0);

71  if

(packed.

Empty

()) {

86  int

wholebytes = (

int

) seq.size() - 1;

87  return

(wholebytes << 2) + (seq[wholebytes] & 0x3);

void Clear()

Free all held memory.

void Insert(const char *x, int L)

Insert string data into the container.

CWriteDB_PackedStrings< BLOCK > TPacked

A packed list of buffers.

void Sort()

Sort all contained data.

CWriteDB_PackedBuffer< BLOCK > m_Buffer

Shared list of packed string buffers.

int m_Size

Number of elements stored in this container.

@ PREFIX

This is the number of bytes for the first level index.

void Clear()

Clear all objects from this container.

TPackedMap m_Packed

Map of string prefixes to packed string lists.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

void Reset(void)

Reset reference object.

bool Empty(void) const THROWS_NONE

Check if CRef is empty – not pointing to any object, which means having a null value.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

unsigned int

A callback function used to compare two keys in a database.

constexpr bool empty(list< Ts... >) noexcept

USING_SCOPE(std)

Use standard C++ definitions.

int WriteDB_FindSequenceLength(bool protein, const string &seq)

Compute length of sequence from raw packing.

Implementation for general purpose utilities for WriteDB.


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