RetroSearch Browse

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/wiggle__reader_8hpp_source.html below:

NCBI C++ ToolKit: include/objtools/readers/wiggle_reader.hpp Source File

33 #ifndef OBJTOOLS_READERS___WIGGLEREADER__HPP 34 #define OBJTOOLS_READERS___WIGGLEREADER__HPP 178

ostr <<

" [CRawWiggleRecord "

;

182

ostr <<

"value="

m_value

"]"

<< endl;

208

ostr <<

"[CRawWiggleTrack"

<< endl;

209 for

(vector<CRawWiggleRecord>::const_iterator it =

m_Records

.begin();

213

ostr <<

"]"

<< std::endl;

222 const

vector<CRawWiggleRecord>&

Records

()

const 248 const string

& =

""

249 const string

& =

""

304

xProcessFixedStepData(

305

TReaderData::const_iterator&,

316

TReaderData::const_iterator&,

320

xReadFixedStepDataRaw(

322

TReaderData::const_iterator&,

327

xProcessVariableStepData(

328

TReaderData::const_iterator&,

333

TReaderData::const_iterator&,

337

xGetVariableStepInfo(

342

xReadVariableStepData(

344

TReaderData::const_iterator&,

348

xReadVariableStepDataRaw(

350

TReaderData::const_iterator&,

400 if

( !m_OmitZeros ||

value

.m_Value != 0 ) {

401

m_Values.push_back(

value

);

408 bool

fixed_span)

const

;

420 const string

& chrom);

423

xValuesAreFromSingleSequence()

const

;

CRawWiggleRecord(CSeq_id &id, unsigned int start, unsigned int span, double value)

CRef< CSeq_interval > m_pInterval

void Dump(CNcbiOstream &ostr) const

const vector< CRawWiggleRecord > & Records() const

void AddRecord(CRawWiggleRecord record)

vector< CRawWiggleRecord > m_Records

Defines and provides stubs for a general interface to a variety of file readers.

virtual bool xParseBrowserLine(const CTempString &, CSeq_annot &)

virtual void xProcessData(const TReaderData &, CSeq_annot &)

virtual void xPostProcessAnnot(CSeq_annot &)

vector< TReaderLine > TReaderData

virtual bool xParseTrackLine(const CTempString &)

virtual void xGetData(ILineReader &, TReaderData &)

virtual CRef< CSeq_annot > ReadSeqAnnot(CNcbiIstream &istr, ILineErrorListener *pErrors=nullptr)

Read an object from a given input stream, render it as a single Seq-annot.

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

vector< SValueInfo > TValues

CRef< CSeq_annot > m_Annot

void xAddValue(const SValueInfo &value)

Abstract base class for lightweight line-by-line reading.

Include a standard set of the NCBI C++ Toolkit most basic headers.

unsigned int TSeqPos

Type for sequence locations and lengths.

const string AsFastaString(void) const

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

#define NCBI_XOBJREAD_EXPORT

void SetTo(TTo value)

Assign a value to To data member.

const TId & GetId(void) const

Get the Id member data.

void SetId(TId &value)

Assign a value to Id data member.

TFrom GetFrom(void) const

Get the From member data.

void SetFrom(TFrom value)

Assign a value to From data member.

TTo GetTo(void) const

Get the To member data.

unsigned int

A callback function used to compare two keys in a database.

const GenericPointer< typename T::ValueType > T2 value

TSeqPos GetEnd(void) const

bool operator<(const SValueInfo &v) const

int AsByte(double v) const

void SetFirstSpan(TSeqPos span)

void SetFirstValue(double v)

void AddSpan(TSeqPos span)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4