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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/wgs__processor_8hpp_source.html below:

NCBI C++ ToolKit: src/app/pubseq_gateway/server/wgs_processor.hpp Source File

(shared_ptr<CPSGS_Request> request,

shared_ptr<CPSGS_Reply> reply)

;

shared_ptr<CPSGS_Reply> reply,

(

)

;

(

)

;

(

)

;

shared_ptr<ncbi::CThreadPool> thread_pool,

shared_ptr<CPSGS_Request> request,

shared_ptr<CPSGS_Reply> reply,

objects::CID2_Reply_Data&

);

(

& psg_blob_id,

objects::CID2_Reply_Data&

);

objects::CID2_Reply_Data&

);

objects::CAsnBinData& obj,

(shared_ptr<CPSGS_Reply> reply,

&

);

(shared_ptr<CPSGS_Reply> reply,

&

,

exception& exc);

obj.IsSetBlob_state() ? obj.GetBlob_state() : 0;

void x_SendResult(const string &data_to_send, EOutputFormat output_format)

void x_SendChunkBlobData(const string &id2_info, TID2ChunkId chunk_id, const objects::CID2_Reply_Data &data)

void x_ProcessBlobBySatSatKeyRequest(void)

void OnGotBlobBySeqId(void)

void GetBlobBySeqId(void)

void x_ProcessResolveRequest(void)

vector< string > TBlobIds

void x_InitClient(void) const

static void x_SendError(shared_ptr< CPSGS_Reply > reply, const string &msg)

void x_SendBlobProps(const string &psg_blob_id, CBlobRecord &blob_props)

EPSGS_Status GetStatus(void) override

Tells the processor status (if it has finished or in progress)

EOutputFormat x_GetOutputFormat(void)

string GetName(void) const override

Tells the processor name (used in logging and tracing)

void Process(void) override

Main processing function.

bool x_CheckExcludedCache(void)

void x_ProcessTSEChunkRequest(void)

void x_Finish(EPSGS_Status status)

string GetGroupName(void) const override

Tells the processor group name.

void x_SendBlobData(const string &psg_blob_id, const objects::CID2_Reply_Data &data)

CRef< objects::CSeq_id > m_SeqId

unsigned long m_ResendTimeoutMks

void x_WriteData(objects::CID2_Reply_Data &data, const objects::CAsnBinData &obj, bool compress) const

void OnGotBlobByBlobId(void)

void x_UnlockRequest(void)

virtual bool CanProcess(shared_ptr< CPSGS_Request > request, shared_ptr< CPSGS_Reply > reply) const override

Tells if processor can process the given request.

SPSGS_ResolveRequest::EPSGS_OutputFormat EOutputFormat

static int x_GetBlobState(const C &obj)

SPSGS_ResolveRequest::TPSGS_BioseqIncludeData TBioseqInfoFlags

shared_ptr< CWGSClient > m_Client

void x_RegisterTimingNotFound(EPSGOperation operation)

shared_ptr< ncbi::CThreadPool > m_ThreadPool

void OnResolvedSeqId(void)

static string GetPSGId2Info(const CID2_Blob_Id &tse_id, CWGSClient::TID2SplitVersion split_version)

shared_ptr< SWGSData > m_WGSData

void GetBlobByBlobId(void)

void x_ProcessBlobBySeqIdRequest(void)

void x_SendSplitInfo(void)

unsigned long m_SentMksAgo

void x_SendForbidden(void)

~CPSGS_WGSProcessor(void) override

IPSGS_Processor * CreateProcessor(shared_ptr< CPSGS_Request > request, shared_ptr< CPSGS_Reply > reply, TProcessorPriority priority) const override

Create processor to fulfil PSG request using the data source.

void x_SendBlobForbidden(const string &psg_blob_id)

void Cancel(void) override

The infrastructure request to cancel processing.

void x_SetExcludedCacheCompleted(void)

void x_RegisterTiming(psg_time_point_t start, EPSGOperation operation, EPSGOperationStatus status, size_t blob_size)

void x_WaitForOtherProcessors(void)

void x_RemoveFromExcludedCache(void)

bool m_AddedToExcludedCache

bool x_SignalStartProcessing()

void x_SendChunkBlobProps(const string &id2_info, TID2ChunkId chunk_id, CBlobRecord &blob_props)

void x_SendMainEntry(void)

void x_SendBioseqInfo(void)

shared_ptr< SWGSProcessor_Config > m_Config

EOutputFormat m_OutputFormat

void x_RegisterTimingFound(psg_time_point_t start, EPSGOperation operation, const objects::CID2_Reply_Data &data)

bool x_IsEnabled(CPSGS_Request &request) const

Main class implementing functionality of pool of threads.

Interface class (and self-factory) for request processor objects that can retrieve data from a given ...

EPSGS_Status

The GetStatus() method returns a processor current status.

operation

Bit operations.

psg_clock_t::time_point psg_time_point_t

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

static CNamedPipeClient * client

int TPSGS_BioseqIncludeData

const string kWGSProcessorEvent

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