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NCBI C++ ToolKit: src/sample/app/blast/vsrun_sample.cpp Source File

(

);

(

);

(

);

arg_desc->SetUsageContext(

().GetProgramBasename(),

);

,

,

,

arg_desc->AddDefaultKey(

,

,

,

vs_list = vs_run.

();

(

& v : vs_list) {

cout << v.seqid->AsFastaString() <<

<< v.range.GetFrom() <<

<< v.range.GetTo() <<

<< v.match_type << endl;

static TRegisterLoaderInfo RegisterInObjectManager(CObjectManager &om, CReader *reader=0, CObjectManager::EIsDefault is_default=CObjectManager::eDefault, CObjectManager::TPriority priority=CObjectManager::kPriority_NotSet)

This class runs vecscreen.

list< SVecscreenSummary > GetList() const

Fetches summary list.

virtual void Init(void)

Initialize the application.

virtual int Run(void)

Run the application.

virtual void Exit(void)

Cleanup on application exit.

void HideStdArgs(THideStdArgs hide_mask)

Set the hide mask for the Hide Std Flags.

#define GI_FROM(T, value)

virtual const CArgs & GetArgs(void) const

Get parsed command line arguments.

int AppMain(int argc, const char *const *argv, const char *const *envp=0, EAppDiagStream diag=eDS_Default, const char *conf=NcbiEmptyCStr, const string &name=NcbiEmptyString)

Main function (entry point) for the NCBI application.

virtual void SetupArgDescriptions(CArgDescriptions *arg_desc)

Setup the command line argument descriptions.

const CNcbiArguments & GetArguments(void) const

Get the application's cached unprocessed command-line arguments.

@ fHideXmlHelp

Hide XML help description.

@ fHideLogfile

Hide log file description.

@ fHideFullVersion

Hide full version description.

@ fHideConffile

Hide configuration file description.

@ fHideVersion

Hide version description.

@ fPreOpen

Open file right away; for eInputFile, eOutputFile, eIOFile.

@ eIntId

Convertible to TIntId (int or Int8 depending on NCBI_INT8_GI)

@ eOutputFile

Name of file (must be writable)

static CRef< CObjectManager > GetInstance(void)

Return the existing object manager or create one.

void AddDefaults(TPriority pri=kPriority_Default)

Add default data loaders from object manager.

Defines the CNcbiApplication and CAppException classes for creating NCBI applications.

int NcbiSys_main(int argc, ncbi::TXChar *argv[])

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