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NCBI C++ ToolKit: src/gui/objutils/visible_range.cpp Source File

, m_Policy(sm_DefaultPolicy)

(**iter, handle, range);

objects::CBioseq_Handle& handle,

this_range.

(handle.GetBioseqLength());

other_range = loc.GetTotalRange();

other_range.

(handle.GetBioseqLength());

this_range = other_range;

this_range = other_range;

this_range = other_range;

this_range.

(this_range.

() + diff);

this_range = other_range;

this_range.

((

)(this_range.

() - diff));

this_range.

((

)(this_range.

() - diff));

}

(other_range.

() > this_range.

()) {

diff = other_range.

() - this_range.

();

this_range.

((

)(this_range.

() + diff));

this_range.

((

)(this_range.

() + diff));

this_range.

((

)(this_range.

() + diff));

this_range.

((

)(this_range.

() + diff));

}

(this_range.

() > other_range.

()) {

diff = this_range.

() - other_range.

();

this_range.

((

)(this_range.

() - diff));

this_range.

((

)(this_range.

() - diff));

}

(new_to > handle.GetBioseqLength()) {

new_from -= new_to - handle.GetBioseqLength();

new_to = handle.GetBioseqLength();

this_range.

(new_from);

this_range.

(new_to);

ret_val = (this_range != range);

total_range = loc.GetTotalRange();

clamped =

;

(

(**iter, bsh2, total_range)) {

(loc, total_range);

(loc.

()) {

CSeq_loc::TPacked_int::Tdata::iterator iter = loc.

().Set().begin();

CSeq_loc::TPacked_int::Tdata::iterator end = loc.

().Set().end();

( ; iter != end; ++iter) {

CSeq_loc::TMix::Tdata::iterator iter = loc.

().Set().begin();

CSeq_loc::TMix::Tdata::iterator end = loc.

().Set().end();

( ; iter != end; ++iter) {

loc.

().Set().erase(iter++);

(

<<

);

static CRef< CScope > m_Scope

@ eVisible_Ignore

combination options

@ ePositionMask

position tracking options

@ eScaleMask

location scale tracking options

static EBasicPolicy GetDefaultVisibleRangePolicy()

CVisibleRange(objects::CScope &scope)

static EBasicPolicy sm_DefaultPolicy

static bool sm_AutoBroadcast

CRef< objects::CScope > m_Scope

list< CConstRef< objects::CSeq_loc > > TLocations

const TLocations & GetLocations() const

bool Clamp(const objects::CBioseq_Handle &handle, TSeqRange &range) const

Alter the supplied range according to the rules provided in the policy and the supplied new location.

bool Match(const objects::CSeq_id &id) const

See if we can match the supplied range.

bool x_Clamp(const objects::CSeq_loc &loc, const objects::CBioseq_Handle &handle, TSeqRange &range) const

internal clamping function to clamp a total range based on a location

void AddLocation(const objects::CSeq_loc &loc)

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

int TSignedSeqPos

Type for signed sequence position.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

const string & GetMsg(void) const

Get message string.

static bool Match(const objects::CSeq_id &id1, const objects::CSeq_id &id2, objects::CScope *scope=NULL)

check to see if two seq-ids are identical.

CConstRef< CSeq_id > GetSeqId(void) const

void SetPacked_int(TPacked_int &v)

void SetId(CSeq_id &id)

set the 'id' field in all parts of this location

TRange GetTotalRange(void) const

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

CSeq_id_Handle GetIdHandle(const CSeq_loc &loc, CScope *scope)

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

TSeqPos GetBioseqLength(void) const

CConstRef< CSeq_id > GetSeqId(void) const

Get id which can be used to access this bioseq handle Throws an exception if none is available.

position_type GetLength(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void SetFrom(TFrom value)

Assign a value to From data member.

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

void SetTo(TTo value)

Assign a value to To data member.

void SetTo(TTo value)

Assign a value to To data member.

TFrom GetFrom(void) const

Get the From member data.

E_Choice Which(void) const

Which variant is currently selected.

void SetFrom(TFrom value)

Assign a value to From data member.

TTo GetTo(void) const

Get the To member data.

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

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