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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/viewer__base_8cpp_source.html below:

NCBI C++ ToolKit: src/app/cn3d/viewer_base.cpp Source File

58

alignmentManager(alnMgr), viewerWindow(window), currentDisplay(

NULL

)

60  if

(!window)

ERRORMSG

(

"ViewerBase::ViewerBase() - got NULL handle"

);

72

(*viewerWindow)->KillWindow();

80

(*viewerWindow)->SetWindowTitle();

95  ERRORMSG

(

"ViewerBase::EnableStacks() - already enabled!"

);

107  ERRORMSG

(

"ViewerBase::Save() - stacks not enabled, or no alignment/display data"

);

124  WARNINGMSG

(

"max undo stack size exceeded - deleting next-from-bottom item"

);

138

newAlignmentMap[*

a

] = newAlignment;

150  ERRORMSG

(

"ViewerBase::Undo() - stacks disabled, or no more undo data"

);

162  ERRORMSG

(

"ViewerBase::Redo() - stacks disabled, or no more redo data"

);

187

DisplayStack::reverse_iterator ds =

displayStack

.rbegin();

195

AlignmentList::const_iterator

a

, ae = as->end();

196  for

(

a

=as->begin();

a

!=ae; ++

a

) {

199

newAlignmentMap[*

a

] = newAlignment;

225  ERRORMSG

(

"ViewerBase::Revert() - stacks disabled!"

);

271  if

(*

viewerWindow

) (*viewerWindow)->SetupFontFromRegistry();

280

(*viewerWindow)->GetCurrentJustification(), &

column

, &

row

))

281

(*viewerWindow)->MakeCellVisible(

column

,

row

);

286  if

(*

viewerWindow

) (*viewerWindow)->MakeSequenceVisible(identifier);

291  if

(*

viewerWindow

) (*viewerWindow)->SaveDialog(prompt,

false

);

void CalculateSelfHitScores(const BlockMultipleAlignment *multiple)

BlockMultipleAlignment * Clone(void) const

SequenceDisplay * Clone(const Old2NewAlignmentMap &newAlignments) const

bool GetDisplayCoordinates(const Molecule *molecule, unsigned int seqIndex, BlockMultipleAlignment::eUnalignedJustification justification, unsigned int *column, unsigned int *row)

void RemoveBlockBoundaryRows(void)

AlignmentStack alignmentStack

void SetWindowTitle(void) const

virtual ~ViewerBase(void)

AlignmentList currentAlignments

std::list< BlockMultipleAlignment * > AlignmentList

void MakeSequenceVisible(const MoleculeIdentifier *identifier)

void SetUndoRedoMenuStates(void)

AlignmentManager * alignmentManager

void RemoveBlockBoundaryRows(void)

DisplayStack displayStack

bool EditorIsOn(void) const

SequenceDisplay * currentDisplay

void InitData(const AlignmentList *alignments, SequenceDisplay *display)

virtual void SaveDialog(bool prompt)

void CalculateSelfHitScores(const BlockMultipleAlignment *multiple)

ViewerBase(ViewerWindowBase **window, AlignmentManager *alnMgr)

static const unsigned int MAX_UNDO_STACK_SIZE

ViewerWindowBase **const viewerWindow

void MakeResidueVisible(const Molecule *molecule, int seqIndex)

void CopyDataFromStack(void)

bool EditorIsOn(void) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

static const char * column

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_SCOPE(ns)

Define a new scope.

std::map< BlockMultipleAlignment *, BlockMultipleAlignment * > Old2NewAlignmentMap

#define row(bind, expected)

#define DELETE_ALL_AND_CLEAR(container, ContainerType)

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