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NCBI C++ ToolKit: src/app/cn3d/vector_math.hpp Source File

(

xi = 0.0,

yi = 0.0,

zi = 0.0)

=v.

;

=v.

;

=v.

;

=v.

;

=v.

;

=v.

;

(

xs,

ys,

zs)

(

== other.

&&

== other.

&&

== other.

);

!(*

== other);

err = 0.0;

(

== 0)

;

(

== 1)

;

(

== 2)

;

(

== 0)

;

(

== 1)

;

(

== 2)

;

+=v.

;

+=v.

;

+=v.

;

-=v.

;

-=v.

;

-=v.

;

*=

;

*=

;

*=

;

/=

;

/=

;

/=

;

sqrt(

*

+

*

+

*

);

(

*

+

*

+

*

);

(

.x*

.x +

.y*

.y +

.z*

.z);

.y*

.z -

.z*

.y,

.z*

.x -

.x*

.z,

.x*

.y -

.y*

.x

s <<

<< v.

<<

<< v.

<<

<< v.

<<

;

(

m0 =1,

m1 =0,

m2 =0,

m3 =0,

m4 =0,

m5 =1,

m6 =0,

m7 =0,

m8 =0,

m9 =0,

m10 =1,

m11 =0,

m12 =0,

m13 =0,

m14 =0,

m15 =1) {

[0]=m0;

[1]=m1;

[2]=m2;

[3]=m3;

[4]=m4;

[5]=m5;

[6]=m6;

[7]=m7;

[8]=m8;

[9]=m9;

[10]=m10;

[11]=m11;

[12]=m12;

[13]=m13;

[14]=m14;

[15]=m15;

(

=0;

<16; ++

)

[

]=o.

[

];

[0] =

[5] =

[10] =

[15] = 1;

[1] =

[2] =

[3] =

[4] =

[6] =

[7] =

[8] =

[9] =

[11] =

[12] =

[13] =

[14] = 0;

(

=0;

<16; ++

)

[

]=o.

[

];

err = 0.0;

natx,

*

*xref,

*

*xvar,

*weights,

*

*dependentCoords,

*transformDependentToMaster);

virtual T * operator[](size_t i_)

Matrix(double m0=1, double m1=0, double m2=0, double m3=0, double m4=0, double m5=1, double m6=0, double m7=0, double m8=0, double m9=0, double m10=1, double m11=0, double m12=0, double m13=0, double m14=0, double m15=1)

Matrix & operator=(const Matrix &matrix_)

Vector & operator+=(const Vector &v)

double lengthSquared(void) const

friend Vector operator+(const Vector &a, const Vector &b)

bool operator==(const Vector &other)

bool operator!=(const Vector &other)

Vector & operator/=(double f)

Vector & operator*=(double f)

double length(void) const

virtual T & operator[](size_t i_)

friend Vector operator-(const Vector &a)

friend double vector_dot(const Vector &a, const Vector &b)

friend Vector vector_cross(const Vector &a, const Vector &b)

Vector & operator=(const Vector &vector_)

Vector(double xi=0.0, double yi=0.0, double zi=0.0)

friend Vector operator/(const Vector &v, double f)

void Set(double xs, double ys, double zs)

friend Vector operator*(const Vector &v, double f)

Vector & operator-=(const Vector &v)

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

void Error(CExceptionArgs_Base &args)

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

Defines NCBI C++ diagnostic APIs, classes, and macros.

The NCBI C++/STL use hints.

NCBI C++ stream class wrappers for triggering between "new" and "old" C++ stream libraries.

void InvertInto(Matrix *I, const Matrix &A)

void SetTranslationMatrix(Matrix *m, const Vector &v, int n=1)

ncbi::CNcbiOstream & operator<<(ncbi::CNcbiOstream &s, const Vector &v)

void SetRotationMatrix(Matrix *m, const Vector &v, double rad, int n=1)

double ComputeRMSD(int nCoords, const Vector *const *masterCoords, const Vector *const *dependentCoords, const Matrix *transformDependentToMaster)

void ComposeInto(Matrix *C, const Matrix &A, const Matrix &B)

void ApplyTransformation(Vector *v, const Matrix &m)

void SetScaleMatrix(Matrix *m, const Vector &v)

void RigidBodyFit(int natx, const Vector *const *xref, const Vector *const *xvar, const double *weights, Vector &cgref, Vector &cgvar, Matrix &rotMat)

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