Run vecscreen, produce output. More...
Include dependency graph for vecscreen_run.cpp:
Go to the source code of this file.
Go to the SVN repository for this file.
Variables USING_NCBI_SCOPE map< string, int > match_type_ints = { {"Strong",0}, {"Moderate",1}, {"Weak",2}, {"Suspect",3},{"Absent",4} } map< int, string > match_type_strs = { {0,"Strong"}, {1,"Moderate"}, {2,"Weak"}, {3,"Suspect"},{4,"Absent"} } Detailed Description Function Documentation ◆ s_MakeFastaSubIds() ◆ s_MakeFastaSubStrs() ◆ s_PopIdPart() ◆ s_ReplaceLocalId()Definition at line 100 of file vecscreen_run.cpp.
References CSeq_id::Assign(), CObject_id_Base::GetId(), CSeq_id_Base::GetLocal(), CObject_id_Base::GetStr(), CAlignFormatUtil::GetTitle(), NStr::IntToString(), CSeq_id_Base::IsLocal(), CObject_id_Base::IsStr(), NcbiEmptyString, CSeq_id_Base::SetLocal(), CObject_id_Base::SetStr(), and NStr::Split().
Referenced by s_SetIdList().
◆ s_SetIdList()Definition at line 138 of file vecscreen_run.cpp.
References CSeqDB::ExtractBlastDefline(), CDeflineGenerator::GenerateDefline(), CBlast_def_line_set_Base::Get(), CShowBlastDefline::GetBioseqHandleDeflineAndId(), CBioseq_Handle::GetId(), CBioseq_Handle::GetSeqId(), CShowBlastDefline::GetSeqIdList(), CRef< C, Locker >::IsNull(), ITERATE, NON_CONST_ITERATE, NPOS, NULL, CFastaReader::ParseDefLine(), s_MakeFastaSubIds(), and s_ReplaceLocalId().
Referenced by CVecscreenRun::CFormatter::x_GetIdsAndTitlesForSeqAlign().
◆ USING_SCOPE() [1/3] ◆ USING_SCOPE() [2/3] ◆ USING_SCOPE() [3/3] Variable Documentation ◆ match_type_ints map<string, int> match_type_ints = { {"Strong",0}, {"Moderate",1}, {"Weak",2}, {"Suspect",3},{"Absent",4} } ◆ match_type_strs map<int, string> match_type_strs = { {0,"Strong"}, {1,"Moderate"}, {2,"Weak"}, {3,"Suspect"},{4,"Absent"} } ◆ USING_NCBI_SCOPERetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4