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NCBI C++ ToolKit: src/sra/data_loaders/vdbgraph/vdbgraphloader.cpp Source File

: m_VDBFiles(1, vdb_file)

: m_VDBFiles(vdb_files)

& vdb_file,

ret =

;

CObjectManager::TPriority GetPriority(const TPluginManagerParamTree *params) const

CObjectManager::EIsDefault GetIsDefault(const TPluginManagerParamTree *params) const

bool ValidParams(const TPluginManagerParamTree *params) const

bool IsDataLoaderMatches(CDataLoader &loader) const

@ eLifeLevel_AppMain

Destroyed in CNcbiApplication::AppMain, if possible.

definition of a Culling tree

TTSE_LockSet GetOrphanAnnotRecords(CDataSource *ds, const CSeq_id_Handle &idh, const SAnnotSelector *sel, CDataLoader::TProcessedNAs *processed_nas)

void GetChunk(CTSE_Chunk_Info &chunk)

TTSE_Lock GetBlobById(CDataSource *ds, const TBlobId &blob_id)

TAnnotNames GetPossibleAnnotNames(void) const

TBlobId GetBlobId(const CSeq_id_Handle &idh)

TBlobId GetBlobIdFromString(const string &str) const

CObjectManager::TPriority GetDefaultPriority(void) const

TTSE_LockSet GetRecords(CDataSource *ds, const CSeq_id_Handle &idh, CDataLoader::EChoice choice)

static string GetLoaderNameFromArgs(void)

vector< CAnnotName > TAnnotNames

~CVDBGraphDataLoader(void)

virtual void GetChunks(const TChunkSet &chunks) override

virtual TTSE_LockSet GetOrphanAnnotRecordsNA(const CSeq_id_Handle &idh, const SAnnotSelector *sel, TProcessedNAs *processed_nas) override

new Get*AnnotRecords() methods

virtual TAnnotNames GetPossibleAnnotNames(void) const

vector< string > TVDBFiles

virtual bool CanGetBlobById(void) const override

CVDBGraphDataLoader(void)

virtual TBlobId GetBlobIdFromString(const string &str) const override

virtual TTSE_LockSet GetRecords(const CSeq_id_Handle &idh, EChoice choice) override

Request from a datasource using handles and ranges instead of seq-loc The TSEs loaded in this call wi...

static TRegisterLoaderInfo RegisterInObjectManager(CObjectManager &om, CObjectManager::EIsDefault is_default=CObjectManager::eNonDefault, CObjectManager::TPriority priority=CObjectManager::kPriority_NotSet)

CRef< CVDBGraphDataLoader_Impl > m_Impl

virtual CObjectManager::TPriority GetDefaultPriority(void) const override

virtual TBlobId GetBlobId(const CSeq_id_Handle &idh) override

virtual TTSE_Lock GetBlobById(const TBlobId &blob_id) override

virtual void GetChunk(TChunk chunk) override

CVDBGraph_DataLoaderCF(void)

virtual CDataLoader * CreateAndRegister(CObjectManager &om, const TPluginManagerParamTree *params) const

virtual ~CVDBGraph_DataLoaderCF(void)

Include a standard set of the NCBI C++ Toolkit most basic headers.

static const char * str(char *buf, int n)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

TLoader * GetLoader(void) const

Get pointer to the loader.

static CRef< CObjectManager > GetInstance(void)

Return the existing object manager or create one.

void RevokeDataLoaders(IDataLoaderFilter &filter)

Revoke data loaders by filter, even if they were still used.

CDataSource * GetDataSource(void) const

EChoice

main blob is blob with sequence all other blobs are external and contain external annotations

EIsDefault

Flag defining if the data loader is included in the "default" group.

TRegisterInfo GetRegisterInfo(void)

static void RegisterInObjectManager(CObjectManager &om, CLoaderMaker_Base &loader_maker, CObjectManager::EIsDefault is_default, CObjectManager::TPriority priority)

Register the loader only if the name is not yet registered in the object manager.

vector< TChunk > TChunkSet

static void NCBI_EntryPointImpl(TDriverInfoList &info_list, EEntryPointRequest method)

Entry point implementation.

list< SDriverInfo > TDriverInfoList

List of driver information.

EEntryPointRequest

Actions performed by the entry point.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

Helper classes and templates to implement plugins.

CRef< objects::CObjectManager > om

void DataLoaders_Register_VDBGraph(void)

const char kDataLoader_VDBGraph_DriverName[]

void NCBI_EntryPoint_xloader_vdbgraph(CPluginManager< objects::CDataLoader >::TDriverInfoList &info_list, CPluginManager< objects::CDataLoader >::EEntryPointRequest method)

static CSafeStatic< CRevoker > s_Revoker(CSafeStaticLifeSpan(CSafeStaticLifeSpan::eLifeLevel_AppMain, CSafeStaticLifeSpan::eLifeSpan_Long))

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