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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/vcf__object__loader_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/loaders/vcf_object_loader.cpp Source File

46 #include <wx/filename.h> 52

: m_Params(params), m_FileNames(

filenames

)

63  return "Loading VCF (Variant Call Format) Files"

;

81  const

wxString& fn = *it;

95  if

(!annot)

continue

;

99  bool

has_name =

false

;

104

CSeq_annot::TDesc::Tdata::const_iterator desc_iter =

data

.begin();

105  for

( ; desc_iter !=

data

.end(); ++desc_iter) {

106  if

((*desc_iter)->IsTitle() ) {

107  label

= (*desc_iter)->GetTitle();

110  if

((*desc_iter)->IsName() ) {

111  label

= (*desc_iter)->GetName();

119

wxFileName wx_fn(fn);

120  string

fileName =

ToStdString

(wx_fn.GetFullName());

133  catch

(

const

exception& e) {

User-defined methods of the data storage class.

User-defined methods of the data storage class.

CMapAssemblyParams GetMapAssembly() const

string GetAssemblyAcc() const

bool GetUseMapping() const

void x_CreateMapper(const string &assembly)

void x_UpdateMap(objects::CSeq_annot &annot)

bool x_ShowMappingDlg(IObjectLoader::TObjects &objects)

void SetCanceler(ICanceled *=nullptr)

void x_ShowErrorsDlg(const wxString &title)

void x_UpdateHTMLResults(const wxString &object, objects::ILineErrorListener *errCont, const string &exception="", const string &error_msg="", const wxString &objectName=wxT("File:"))

void SetNameDesc(const string &name)

Simple implementation of ILineReader for i(o)streams.

CRef< CSeq_annot > ReadSeqAnnot(ILineReader &, ILineErrorListener *=nullptr) override

Read an object from a given line reader, render it as a single Seq-annot, if possible.

Interface for testing cancellation request in a long lasting operation.

vector< SObject > TObjects

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

const string & GetMsg(void) const

Get message string.

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

virtual string GetDescription() const

virtual TObjects & GetObjects()

virtual bool PreExecute()

virtual bool Execute(ICanceled &canceled)

virtual bool PostExecute()

vector< wxString > m_FileNames

CVcfObjectLoader(const CBedLoadParams &params, const vector< wxString > &filenames)

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

virtual bool IsCanceled(void) const =0

static const char label[]

const Tdata & Get(void) const

Get the member data.

const TDesc & GetDesc(void) const

Get the Desc member data.

bool CanGetDesc(void) const

Check if it is safe to call GetDesc method.

bool CanGet(void) const

Check if it is safe to call Get method.

list< CRef< CAnnotdesc > > Tdata

Lightweight interface for getting lines of data with minimal memory copying.

string ToStdString(const wxString &s)

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