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NCBI C++ ToolKit: src/gui/widgets/seq_graphic/vcf_histogram.cpp Source File

.AppendInteger(bin_width);

.ToString();

(cache_key.empty())

field_bin_width = field_annot.GetNextNeighbor();

: m_AnnotName(

.m_AnnotName)

, m_BinWidth(

.m_BinWidth)

, m_DataKey(

.m_DataKey)

, m_Data(

.m_Data)

blob_size = 0;

}

(

exception&) {

.resize(blob_size);

}

(exception& e) {

w.write((

*)sv_lay.

(), sv_lay.

());

(

&

: it->second) {

histogram_cache.RemoveData(

);

Serialization / compression of bvector<>. Set theoretical operations on compressed BLOBs.

Serialization for sparse_vector<>

Checksum and hash calculation classes.

CChecksum – Checksum calculator.

Pool of recycled CCompoundID objects.

CCompoundID NewID(ECompoundIDClass new_id_class)

Create and return a new CCompoundID objects.

CCompoundID FromString(const string &cid)

Unpack the base64-encoded ID and return a CCompoundID object for field extraction.

void AppendString(const string &string_value)

Append an eCIT_String field at the end of this compound ID.

CCompoundIDField GetFirst(ECompoundIDFieldType field_type)

Return the first field of the specified type or NULL if this compound ID contains no fields of such t...

static CGraphCache & GetInstance()

Guard that can be used to automatically return object to the pool after leaving some scope.

Note about the "buf_size" parameter for streams in this API.

@ fOwnReader

Own the underlying reader.

@ fOwnWriter

Own the underlying writer.

static mutex m_KeysMapMutex

Mutex for the cache keys.

CVcfHistogram(const string &cache_key)

Copy constructor is invoked by CGraphCache which clones the data for aynchroneous saving operation.

static map< string, vector< string > > m_KeysMap

Map of cache keys per annotation.

static void EraseCachePerAnnotation(const string &annot_name)

static string GetCacheKey(const string &annot_name, const size_t bin_width)

static void InitHistogramGlyph(size_t bin_width, const TSeqRange &range, const THistogramVector &histogram, CHistogramGlyph::TMap &dmap)

mutex m_DataMutex

data access mutex

void Init(TGraphCachePool &icache_pool)

Save is invoked by CGraphCache when cached data needs to be permanently saved into NetCache.

void Save(TGraphCachePool &icache_pool)

Initializes the histogram map for a given range.

void GetHistogram(const TSeqRange &range, CHistogramGlyph::TMap &dmap) const

Sets the histogram data.

Writer-based output stream.

sparse vector de-serializer

void deserialize(SV &sv, const unsigned char *buf, bool clear_sv=true)

Serialize sparse vector into a memory buffer(s) structure.

bool is_xor_ref() const noexcept

Returns the XOR reference compression status (enabled/disabled)

void serialize(const SV &sv, sparse_vector_serial_layout< SV > &sv_layout)

Serialize sparse vector into a memory buffer(s) structure.

void enable_xor_compression() noexcept

Enable XOR compression on vector serialization.

bool empty() const noexcept

return true if vector is empty

void optimize(bm::word_t *temp_block=0, typename bvector_type::optmode opt_mode=bvector_type::opt_compress, typename sparse_vector< Val, BV >::statistics *stat=0)

run memory optimization for all vector planes

const_iterator end() const

const_iterator find(const key_type &key) const

string GetHexSum(void) const

Return string with checksum in hexadecimal form.

void AddLine(const char *line, size_t len)

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

void Error(CExceptionArgs_Base &args)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

const struct ncbi::grid::netcache::search::fields::KEY key

Defines a portable execute class.

Reader-writer based streams.

layout class for serialization buffer structure

const unsigned char * buf() const noexcept

Return serialization buffer pointer.

size_t size() const noexcept

return current serialized size

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