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NCBI C++ ToolKit: include/gui/widgets/seq_graphic/vcf_glyph.hpp Source File

& ref_allele,

& alt_alleles);

objects::CSeq_loc&

(

)

;

LayoutChanged();

GetAdditionalInfo(

& sAdditionalInfo)

;

()

;

x_MaybeDrawLabelAbove(

& base)

;

x_DrawVariationBar(

base)

;

x_DrawAdditionalInfo(

base)

;

x_MaybeDrawLabelOthers(

base)

;

x_RedundantLabelCheck(

&

)

;

x_DrawInsertion(

SeqPosTriangleMidPointX,

x_DrawDeletion(

SeqPosTriangleMidPointX,

x_DrawLabelWithXPinned(

& base)

;

x_DrawLabelWithYPinned(

base)

;

x_isDrawn()

;

x_ShowLabel()

;

x_LabelOnLeft()

;

m_HideLabel{

};

m_CustomColorIsSet{

};

}

(idx <

.size()) {

User-defined methods of the data storage class.

vector< CRgbaColor > TColorCode

const TColorCode & GetColorCode() const

CRef< CCustomFeatureColor > m_CustomColors

custom color code for features with a special attribute.

class CRgbaColor provides a simple abstraction for managing colors.

class CSeqGlyph defines an interface that wraps a rectilinear abstract object.

virtual bool HitTestHor(TSeqPos x, const CObject *obj)

virtual void SetHideLabel(bool)

Force to hide label.

virtual bool IsClickable() const

Query if this glyph is clickable.

virtual void x_Draw() const =0

The default renderer for this layout object.

void x_DrawInnerLabels(TModelUnit base, const string &label, const CRgbaColor &color, const CGlTextureFont &font, bool side_label_visible, bool inside_only, vector< TModelRange > *labels_ranges=nullptr, TSeqRange *interval=nullptr, bool XOR_mode=false) const

virtual void GetTooltip(const TModelPoint &, ITooltipFormatter &tt, string &t_title) const

Get the tooltip if available.

virtual bool NeedTooltip(const TModelPoint &, ITooltipFormatter &, string &) const

Check if need to show tooltip.

virtual TSeqRange GetRange(void) const

get the total range of this object.

virtual bool LessBySeqPos(const CSeqGlyph &obj) const

compare this object to another based on glyph sequence position.

virtual bool HasSideLabel() const

Query if there is label and label is on the side.

virtual bool SetSelected(bool flag)

Select or deselect this glyph.

virtual void x_DrawHighlight() const

virtual void GetHTMLActiveAreas(TAreaVector *) const

Get html active areas.

virtual void x_UpdateBoundingBox()=0

Update the bounding box assuming children's sizes are fixed if any.

vector< CHTMLActiveArea > TAreaVector

CConstRef< objects::CVcfVariant > m_Object

CVcfGlyph(const objects::CVcfVariant *object)

bool x_LabelFirst() const

check to see if label needs to be drawn before feature bar.

bool isDrawn() const

determines whether the glyph should be drawn or not at all (currently children of unselected parents ...

void SetConfig(CConstRef< CFeatureParams > conf)

bool GetCustomColor(CRgbaColor &color) const

Get the customized color for a given feature.

bool x_HasOuterOnly() const

CVcfGlyph(objects::CSeq_id &seq_id, const string &sID, size_t pos, const string &ref_allele, const string &alt_alleles)

alternative alleles separated by /

CConstRef< CFeatureParams > m_Config

unique_ptr< CRgbaColor > m_CustomColorPtr

CConstRef< CFeatureParams > GetConfig() const

CVcfGlyph inline implementations.

virtual const TIntervals & GetIntervals(void) const =0

access sub-intervals (if any).

virtual CConstRef< CObject > GetObject(TSeqPos pos) const =0

access our core component - we wrap an object(s) of some sort.

virtual const objects::CSeq_loc & GetLocation(void) const =0

access the position of this object.

virtual string GetSignature() const =0

return signature for this glyph.

virtual bool HasObject(CConstRef< CObject > obj) const =0

check if the wrapped object(s) is the one.

vector< TSeqRange > TIntervals

static const Colors colors

vector< CConstRef< CObject > > GetObjects(CSeq_entry_Handle seh, const string &field, CFieldNamePanel::EFieldType field_type, int subtype, const string &ncRNA_class, CConstRef< objects::CSeq_submit > submit, CRef< CEditingActionConstraint > constraint, vector< CSeq_entry_Handle > *descr_context=nullptr)

unsigned int TSeqPos

Type for sequence locations and lengths.

string GetLabel(const CSeq_id &id)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIWIDGETS_SEQGRAPHIC_EXPORT

static const char label[]

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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