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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/validerror__format_8hpp_source.html below:

NCBI C++ ToolKit: include/objtools/validator/validerror_format.hpp Source File

Go to the documentation of this file.

Go to the SVN repository for this file.

1 #ifndef VALIDATOR___VALIDERROR_FORMAT__HPP 2 #define VALIDATOR___VALIDERROR_FORMAT__HPP 93

vector<CValidErrItem::TErrIndex> GetListOfErrorCodes(

const CValidError

& errors)

const

;

94

vector<string> FormatCompleteSubmitterReport(

const CValidError

& errors,

CScope

& scope)

const

;

98 static string

GetFeatureBioseqLabel(

const CSeq_feat

& ft,

CRef<CScope>

scope,

bool

suppress_context);

99 static string

GetFeatureProductLocLabel(

const CSeq_feat

& ft,

CRef<CScope>

scope,

bool

suppress_context);

100 static string

GetFeatureIdLabel(

const CSeq_feat

& ft);

101 static string

GetFeatureIdLabel (

const CFeat_id

& feat_id);

102 static string

GetFeatureLocationLabel(

const CSeq_feat

& ft,

CRef<CScope>

scope,

bool

suppress_context);

104 static string

GetDescriptorContent (

const CSeqdesc

& ds);

108 static string

GetBioseqSetLabel(

const CBioseq_set

bool

suppress_context);

109 static string

GetBioseqSetLabel(

const string

& accession,

CBioseq_set::EClass

setClass,

bool

suppress_context);

127 string

x_FormatConsensusSpliceForSubmitterReport(

const CValidErrItem

error

)

const

;

129 string

x_FormatBadSpecificHostForSubmitterReport(

const CValidErrItem

error

)

const

;

134 static const string

& x_GetLocusTag(

const CSeq_feat

& sf,

CScope

& scope);

User-defined methods of the data storage class.

@Pubdesc.hpp User-defined methods of the data storage class.

namespace ncbi::objects::

CValidErrorFormat & operator=(const CValidErrorFormat &)=delete

CValidErrorFormat(const CValidErrorFormat &)=delete

CRef< CObjectManager > m_ObjMgr

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_VALIDATOR_EXPORT

Defines NCBI C++ diagnostic APIs, classes, and macros.

static SLJIT_INLINE sljit_ins st(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

ESubmitterFormatErrorGroup

@ eSubmitterFormatErrorGroup_BadInstitutionCode

@ eSubmitterFormatErrorGroup_BadEcNumberValue

@ eSubmitterFormatErrorGroup_ConsensusSplice

@ eSubmitterFormatErrorGroup_BadEcNumberProblem

@ eSubmitterFormatErrorGroup_BadEcNumberFormat

@ eSubmitterFormatErrorGroup_Default

@ eSubmitterFormatErrorGroup_LatLonCountry

@ eSubmitterFormatErrorGroup_BadSpecificHost

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