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NCBI C++ ToolKit: src/objtools/validator/validerror_descr.cpp Source File

num_sources = 0,

* first_title =

;

same_taxnames =

;

( desc.

() ) {

,

, *first_title);

same_taxnames =

;

lastname = currname.c_str();

( num_sources > 1 && same_taxnames ) {

,

, *last_source);

@ eErr_SEQ_DESCR_MultipleBioSources

@ eErr_SEQ_DESCR_MultipleTitles

const string & GetTaxname(void) const

bool IsSetTaxname(void) const

@Seq_descr.hpp User-defined methods of the data storage class.

void PostErr(EDiagSev sv, EErrType et, const string &msg, const CSerialObject &obj)

void ValidateSeqDesc(const CSeqdesc &desc, const CSeq_entry &ctx)

Validate descriptors as stand alone objects (no context)

bool ValidateStructuredCommentInternal(const CSeqdesc &desc, bool report=true)

void ValidateSeqDescr(const CSeq_descr &descr, const CSeq_entry &ctx)

~CValidError_descr() override

bool ValidateStructuredComment(const CSeqdesc &desc, bool report)

CValidError_desc m_DescValidator

Include a standard set of the NCBI C++ Toolkit most basic headers.

@ eDiag_Error

Error message.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

const char *const kEmptyCStr

Empty "C" string (points to a '\0').

const TSource & GetSource(void) const

Get the variant data.

E_Choice Which(void) const

Which variant is currently selected.

@ e_Embl

EMBL specific information.

@ e_Het

cofactor, etc associated but not bound

@ e_Org

if all from one organism

@ e_Num

a numbering system

@ e_User

user defined object

@ e_Update_date

date of last update

@ e_Pub

a reference to the publication

@ e_Pir

PIR specific info.

@ e_Genbank

GenBank specific info.

@ e_Prf

PRF specific information.

@ e_Mol_type

type of molecule

@ e_Sp

SWISSPROT specific info.

@ e_Dbxref

xref to other databases

@ e_Comment

a more extensive comment

@ e_Method

sequencing method

@ e_Region

overall region (globin locus)

@ e_Molinfo

info on the molecule and techniques

@ e_Maploc

map location of this sequence

@ e_Create_date

date entry first created/released

@ e_Title

a title for this sequence

@ e_Pdb

PDB specific information.

@ e_Name

a name for this sequence

@ e_Source

source of materials, includes Org-ref

#define FOR_EACH_DESCRIPTOR_ON_DESCR

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