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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/validate__panel_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/validate_panel.cpp Source File

: m_Workbench(

)

wxWindowID

,

wxPoint& pos,

wxSize&

,

style )

: m_Workbench(wb), m_params(params), m_SelectionClient(new

(

))

wxPanel::Create( parent,

, pos,

, style );

SetCursor(wxCursor(wxNullCursor));

wxSetCursor(wxNullCursor);

wxPanel* itemPanel2 =

;

wxBoxSizer* itemBoxSizer3 =

wxBoxSizer(wxVERTICAL);

itemPanel2->SetSizer(itemBoxSizer3);

wxBoxSizer* itemBoxSizer4 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer3->Add(itemBoxSizer4, 0, wxALIGN_LEFT|wxALL, 5);

wxStaticBox* itemStaticBoxSizer7Static =

wxStaticBox(itemPanel2,

,

(

));

wxStaticBoxSizer* itemStaticBoxSizer7 =

wxStaticBoxSizer(itemStaticBoxSizer7Static, wxVERTICAL);

itemBoxSizer4->Add(itemStaticBoxSizer7, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

=

wxStaticText( itemPanel2, wxID_STATIC, wxEmptyString, wxDefaultPosition, wxSize(450, -1), 0 );

itemStaticBoxSizer7->Add(

, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

=

wxStaticText( itemPanel2, wxID_STATIC, wxEmptyString, wxDefaultPosition, wxSize(450, -1), 0 );

itemStaticBoxSizer7->Add(

, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxStaticText* itemStaticText5 =

wxStaticText( itemPanel2, wxID_STATIC,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer4->Add(itemStaticText5, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxArrayString m_SeverityStrings;

m_SeverityStrings.Add(

(

));

m_SeverityStrings.Add(

(

));

m_SeverityStrings.Add(

(

));

m_SeverityStrings.Add(

(

));

itemBoxSizer4->Add(

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxStaticText* itemStaticText7 =

wxStaticText( itemPanel2, wxID_STATIC,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer4->Add(itemStaticText7, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxArrayString m_FilterStrings;

m_FilterStrings.Add(

(

));

->SetStringSelection(

(

));

itemBoxSizer4->Add(

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

statusText =

;

statusText =

;

statusText =

;

statusText += errMsg;

statusText +=

;

main_objects.push_back(

.back());

statusText =

;

statusText =

;

<<

(!statusText.empty())

errcode =

->GetStringSelection().ToStdString();

& tbl_data =

->SetData();

err_counts[

->GetSeverity()]++;

severity =

;

tbl_data.emplace_back(severity, accession, title,

);

item_index = tbl_data.size() - 1;

err_code =

->GetErrIndex();

tbl_data[item_index].m_ImgIndex = 3;

tbl_data[item_index].m_Selectable =

;

vector< CIRef<IProjectView> >& views = doc->

();

(

& view : views)

prj_view->GetMainObject(

);

prj_view->SetOrigObject(obj);

item =

.GetIndex();

err_code =

->GetErrIndex();

accession =

->GetAccession();

bsh =

->GetBioseqHandle(*

);

item =

.GetIndex();

err_code =

->GetErrIndex();

(

&&

->IsSetLocation())

(

= 0;

< num_rows;

++)

item =

.GetIndex();

description =

->GetErrCode();

<<

<< description <<

;

answer = wxMessageBox(

,

(

), wxYES_NO | wxICON_QUESTION,

);

suppress->

(*desc_it);

validator::CValidErrorFormat::AddSuppression(suppress->

(), err_index);

validator::CValidErrorFormat::AddSuppression(suppress->

(), err_index);

(

item = 0; item <

->GetItemCount(); ++item) {

accession =

->GetAccession();

bsh =

->GetBioseqHandle(acc_id);

(

exception&) {}

seq_submit.

(sub);

(!top_seq_entry) {

}

(exception &) {}

->SetLabel(

(

));

->SetLabel(

(

));

wxPoint p =

.GetPosition();

item = p.y / rect0.GetHeight();

SetCursor(wxCursor(wxNullCursor));

wxSetCursor(wxNullCursor);

SetCursor(wxCursor(wxNullCursor));

wxSetCursor(wxNullCursor);

hand_cursor =

;

err_code =

->GetErrIndex();

hand_cursor =

;

SetCursor(wxCursor(wxCURSOR_HAND));

wxSetCursor(wxCursor(wxCURSOR_HAND));

SetCursor(wxCursor(wxNullCursor));

wxSetCursor(wxNullCursor);

CSeq_entry_Handle GetSeqEntryForSeqdesc(CRef< CScope > scope, const CSeqdesc &seq_desc)

IAppJobListener Interface for components that need to be notified about changes in Jobs.

string GetItemText(long item) const

void SetData(CRef< CErrorData > error_data)

long GetActualIndex(long item) const

CEvent - generic event implementation TODO TODO - Attachments.

wxString GetWorkDir() const

virtual const TViews & GetViews(void) const

Retrieve the existing views for this class.

CUndoManager & GetUndoManager()

CSeqGraphicWidget * GetWidget()

CProjectService - a service providing API for operations with Workspaces and Projects.

EEventSubtype GetSubtype() const

void SetSelectedObjects(TConstScopedObjects &objs)

TDim CheckNumRows(void) const

Validatiors.

const CSeq_id & GetSeq_id(TDim row) const

Get seq-id (the first one if segments have different ids).

namespace ncbi::objects::

Base class for all serializable objects.

void SetObjectType(EObjectType obj_type)

@ eObjectType_ValidationSuppression

static const string & ConvertSeverity(EDiagSev sev)

const string GetErrCode() const

EDiagSev GetSeverity() const

static bool ShowToolTips()

Should we show tooltips?

void OnErrcodeChoiceSelected(wxCommandEvent &event)

CRef< CJobAdapter > m_JobAdapter

CRef< CObjectFor< objects::CValidError::TErrs > > m_errs

objects::CGBProjectHandle * m_ProjectHandle

void OnChildFocus(wxChildFocusEvent &evt)

objects::CProjectItem * m_ProjectItem

string GetItemText(long item) const

void OnListItemActivated(wxListEvent &event)

bool x_IsSelectable(const CSerialObject *obj)

void Init()

Initialises member variables.

void x_LaunchEditor(CRef< objects::CValidErrItem > error)

void OnListItemRightClick(wxListEvent &event)

void OnListItemSelected(wxListEvent &event)

void OnValidatorSeveritySelected(wxCommandEvent &event)

CErrorListCtrl * m_ErrorListCtrl

IProjectView * x_FindGraphicalSequenceView(CRef< objects::CSeq_id > id)

CIRef< IFlatFileCtrl > m_FlatFileCtrl

CRef< objects::CUser_object > m_params

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

void CreateControls()

Creates the controls and sizers.

void GetSelected(set< objects::CBioseq_Handle > &selected)

void x_GetObjectsFromProjectItem()

TConstScopedObjects m_objects

virtual ~CValidatePanel()

Destructor.

void x_ConnectListener(void)

vector< size_t > m_visible

void GetTopSeqAndSeqSubmit(objects::CSeq_entry_Handle &top_seq_entry, CConstRef< objects::CSeq_submit > &seq_submit)

virtual void OnJobResult(CObject *result, CJobAdapter &adapter)

void x_DisconnectListener(void)

CRef< objects::CScope > m_Scope

void OnMouseMove(wxMouseEvent &event)

wxStaticText * m_SummaryText

void x_UpdateList(const string &statusText)

bool m_SelectionClientAttached

bool Create(wxWindow *parent, wxWindowID id=17001, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxSUNKEN_BORDER|wxTAB_TRAVERSAL)

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

bool x_MatchFilter(const objects::CValidErrItem &valitem) const

CRef< CSelectionClient > m_SelectionClient

virtual void OnJobFailed(const string &, CJobAdapter &adapter)

bool x_MatchSeverity(const objects::CValidErrItem &valitem) const

void x_OnDataChanged(CEvent *evt)

wxStaticText * m_Modified

CValidatePanel()

Constructors.

Undo/Redo interface for editing operations.

virtual void Execute(IEditCommand *command, wxWindow *window=0)=0

class IProjectView defines the abstract interface for views observing projects.

virtual wxWindow * GetWindow()=0

returns a pointer to the wxWindow representing the client

IWorkbench is the central interface in the application framework.

iterator_bool insert(const value_type &val)

bool IsEditable(int err_code, const CSerialObject &obj, objects::CSeq_entry_Handle seh)

void LaunchEditor(int err_code, const CSerialObject &obj, objects::CSeq_entry_Handle seh, IWorkbench *wb)

IMPLEMENT_CLASS(CFloatingFrame, CFloatingFrameBaseClass) const static long kFloatFrameStyle

CFloatingFrame.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

EDiagSev

Severity level for the posted diagnostics.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

@ eDiag_Info

Informational message.

@ eDiag_Error

Error message.

@ eDiag_Warning

Warning message.

@ eDiag_Critical

Critical error message.

void Error(CExceptionArgs_Base &args)

CIRef< T > GetServiceByType()

retrieves a typed reference to a service, the name of C++ type is used as the name of the service.

objects::CSeq_entry_Handle GetTopSeqEntryFromScopedObject(SConstScopedObject &obj)

virtual void RemoveListener(CEventHandler *listener)

Remove a listener.

#define ON_EVENT(type, id, handler)

#define END_EVENT_MAP()

Ends definition of Command Map.

#define BEGIN_EVENT_MAP(thisClass, baseClass)

Begins definition of Command Map for CEventHandler-derived class.

virtual void AddListener(CEventHandler *listener, int pool_name=ePool_Default)

Add a listener.

vector< SConstScopedObject > TConstScopedObjects

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

@ fParse_Default

By default in ParseIDs and IsValid, allow raw parsable non-numeric accessions and plausible local acc...

TRange GetTotalRange(void) const

bool IsSameBioseq(const CSeq_id &id1, const CSeq_id &id2, CScope *scope, CScope::EGetBioseqFlag get_flag=CScope::eGetBioseq_All)

Determines if two CSeq_ids represent the same CBioseq.

vector< CSeq_entry_Handle > TTSE_Handles

CSeq_entry_Handle GetParentEntry(void) const

Get parent Seq-entry handle.

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

CSeq_entry_Handle GetParentEntry(void) const

Return a handle for the parent seq-entry of the bioseq.

CSeq_entry_Handle GetTopLevelEntry(void) const

Get top level Seq-entry handle.

CConstRef< C > ConstRef(const C *object)

Template function for conversion of const object pointer to CConstRef.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

T & GetData(void)

Get data as a reference.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

const TLocation & GetLocation(void) const

Get the Location member data.

bool IsSetLocation(void) const

feature made from Check if a value has been assigned to Location data member.

TUser & SetUser(void)

Select the variant.

@ e_User

user defined object

bool IsSetData(void) const

Check if a value has been assigned to Data data member.

const TEntrys & GetEntrys(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

bool IsEntrys(void) const

Check if variant Entrys is selected.

void GetViewObjects(IWorkbench *workbench, TConstScopedObjects &objects)

const struct ncbi::grid::netcache::search::fields::SIZE size

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

#define row(bind, expected)

#define ID_VALIDATE_FRAME_ERRCODE

#define ID_VALIDATE_FRAME_SEVERITY

#define ID_VALIDATE_FRAME_TEXTCTRL

wxString ToWxString(const string &s)

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