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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/valid__biosource_8cpp.html below:

NCBI C++ ToolKit: src/objtools/validator/valid_biosource.cpp File Reference

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◆ NCBI_USE_ERRCODE_X ◆ TPCRReactionSet ◆ IsOrgNotFound() ◆ IsUnexpectedViralOrgModQualifier() ◆ IsUnexpectedViralSubSourceQualifier() ◆ NCBI_NewTaxVal() ◆ s_CompleteGenomeNeedsChromosome() ◆ s_FindWholeName() ◆ s_GetJustNucSeqEntry() ◆ s_GetNucSeqFromContext() ◆ s_HasMetagenomeSource() ◆ s_HasWGSTech() ◆ s_init_NewTaxVal() ◆ s_IsAllDigitsOrSpaces() ◆ s_IsArchaea() ◆ s_IsBacteria() ◆ s_IsBioSample() ◆ s_IsChromosome() ◆ s_IsEukaryoteOrProkaryote() ◆ s_IsUndefinedSpecies() ◆ s_MatchOrgname()

Definition at line 1876 of file valid_biosource.cpp.

References COrgName_Base::C_Name::e_Hybrid, COrgName_Base::C_Name::e_Partial, NStr::Equal(), CMultiOrgName_Base::Get(), CPartialOrgName_Base::Get(), COrgName::GetFlatName(), COrgName_Base::C_Name::GetHybrid(), COrgName_Base::GetName(), COrgName_Base::C_Name::GetPartial(), COrgName_Base::IsSetName(), kEmptyStr, and COrgName_Base::C_Name::Which().

Referenced by CValidError_imp::ValidateTaxNameOrgname().

◆ s_PCRPrimerLess() ◆ s_PCRPrimerSetLess() ◆ s_PCRReactionLess() ◆ s_PCRSetCompare() ◆ s_PCRSetEqual() ◆ s_ReportUndefinedSpeciesId() ◆ s_UnbalancedParentheses() ◆ x_GetTentativeName() ◆ x_HasTentativeName() ◆ x_RepairCountryName() ◆ kDefaultChunkSize const size_t kDefaultChunkSize = 1000 ◆ kInvalidReplyMsg const string kInvalidReplyMsg = "Taxonomy service returned invalid reply" static ◆ m_SourceQualTags ◆ sm_SourceQualPrefixes std::string_view sm_SourceQualPrefixes[] ◆ sNumUnexpectedViralOrgModQualifiers ◆ sNumUnexpectedViralSubSourceQualifiers ◆ sUnexpectedViralOrgModQualifiers ◆ sUnexpectedViralSubSourceQualifiers

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