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NCBI C++ ToolKit: src/objtools/flatfile/utilfun.h Source File

(

objects::CGB_block::TExtra_accessions& extra_accs, objects::CGB_block::TExtra_accessions& hist);

*

(string_view where, string_view what);

(string_view,

vector<string>& keywordList);

(string_view

,

* estk,

* stsk,

* gssk,

* htck,

* flik,

* wgsk,

* tpak,

* envk,

* mgak,

* tsak,

* tlsk);

(

seqtype, objects::CSeq_id& seqId, objects::CTextseq_id& textId);

std::list<std::string> keywordList,

User-defined methods of the data storage class.

DataBlk::TList TDataBlkList

std::list< std::string > TKeywordList

static const char * str(char *buf, int n)

uint8_t Uint1

1-byte (8-bit) unsigned integer

int16_t Int2

2-byte (16-bit) signed integer

int32_t Int4

4-byte (32-bit) signed integer

char Char

Alias for char.

uint16_t Uint2

2-byte (16-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static void text(MDB_val *v)

const CharType(& source)[N]

static const char delimiter[]

string_view GetNodeData(const DataBlk &entry, int nodeType)

bool HasHtg(const TKeywordList &keywords)

bool HasHtc(const TKeywordList &keywords)

void check_est_sts_gss_tpa_kwds(const TKeywordList &kwds, size_t len, IndexblkPtr entry, bool tpa_check, bool &specialist_db, bool &inferential, bool &experimental, bool &assembly)

bool fta_tls_keywords_check(const TKeywordList &kwds, Parser::ESource source)

char * SrchTheChar(string_view where, Char letter)

void CpSeqId(InfoBioseq *ibp, const objects::CSeq_id &id)

void PointToNextToken(char *&ptr)

void RemoveHtgPhase(TKeywordList &keywords)

void xCheckEstStsGssTpaKeywords(const std::list< std::string > keywordList, bool tpa_check, IndexblkPtr entry)

bool SetTextId(Uint1 seqtype, objects::CSeq_id &seqId, objects::CTextseq_id &textId)

bool CheckLineType(string_view str, Int4 type, const vector< string > &keywordList, bool after_origin)

Int2 StringMatchIcase(const Char **array, string_view text)

void fta_remove_tsa_keywords(TKeywordList &kwds, Parser::ESource source)

objects::CScope & GetScope()

Int2 MatchArrayISubString(const Char **array, string_view text)

void fta_remove_tpa_keywords(TKeywordList &kwds)

Int2 MatchArraySubString(const Char **array, string_view text)

char * StringIStr(const Char *where, const Char *what)

TDataBlkList & TrackNodes(const DataBlk &entry)

void fta_remove_tls_keywords(TKeywordList &kwds, Parser::ESource source)

char * SrchTheStr(string_view where, string_view what)

Int2 MatchArrayString(const Char **array, string_view text)

Int2 fta_StringMatch(const Char **array, string_view text)

void fta_StringCpy(char *dst, const char *src)

void fta_remove_keywords(int tech, TKeywordList &kwds)

DataBlk * TrackNodeType(const DataBlk &entry, Int2 type)

bool fta_is_tls_keyword(string_view str)

string GetTheCurrentToken(char **ptr)

void fta_remove_mag_keywords(TKeywordList &kwds)

TokenStatBlk TokenString(string_view str, Char delimiter)

Int2 MatchArrayIString(const Char **array, string_view text)

void fta_keywords_check(string_view str, bool *estk, bool *stsk, bool *gssk, bool *htck, bool *flik, bool *wgsk, bool *tpak, bool *envk, bool *mgak, bool *tsak, bool *tlsk)

bool IsCancelled(const TKeywordList &keywords)

int SrchKeyword(string_view, const vector< string > &keywordList)

const Section * xTrackNodeType(const Entry &, int type)

bool fta_is_tpa_keyword(string_view str)

bool fta_tsa_keywords_check(const TKeywordList &kwds, Parser::ESource source)

void fta_remove_env_keywords(TKeywordList &kwds)

bool fta_is_tsa_keyword(string_view str)

CRef< objects::CDate_std > get_full_date(string_view date_view, bool is_ref, Parser::ESource source)

bool fta_tpa_keywords_check(const TKeywordList &kwds)

bool ParseAccessionRange(TokenStatBlk &, unsigned skip)

void UnwrapAccessionRange(const objects::CGB_block::TExtra_accessions &extra_accs, objects::CGB_block::TExtra_accessions &hist)

bool fta_check_mga_keywords(objects::CMolInfo &mol_info, const TKeywordList &kwds)

void CleanTailNonAlphaChar(std::string &str)

string GetBlkDataReplaceNewLine(string_view, Uint2 indent)

bool SrchNodeType(const DataBlk &entry, Int4 type, size_t *len, char **)

static Uint4 letter(char c)

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