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NCBI C++ ToolKit: include/objmgr/unsupp_editsaver.hpp Source File

( GetErrCode() ) {

;

@Seq_descr.hpp User-defined methods of the data storage class.

namespace ncbi::objects::

virtual const char * GetErrCodeString(void) const override

Get error code interpreted as text.

NCBI_EXCEPTION_DEFAULT(CUnsupportedEditSaverException, CException)

virtual void ResetIds(const CBioseq_Handle &, const TIds &, ECallMode)=0

virtual void SetSeqInst(const CBioseq_Handle &, const CSeq_inst &, ECallMode)=0

CSeq_inst operatoions.

virtual void SetBioseqSetDate(const CBioseq_set_Handle &, const CBioseq_set::TDate &, ECallMode)=0

virtual void Remove(const CSeq_entry_Handle &entry, const CSeq_annot_Handle &what, ECallMode)=0

virtual void SetSeqInstHist(const CBioseq_Handle &handle, const CSeq_inst::THist &hist, ECallMode)=0

virtual void ResetBioseqSetDate(const CBioseq_set_Handle &, ECallMode)=0

virtual void ResetSeqInstLength(const CBioseq_Handle &, ECallMode)=0

virtual void Replace(const CSeq_feat_Handle &handle, const CSeq_feat &old_value, ECallMode)=0

virtual void SetSeqInstExt(const CBioseq_Handle &handle, const CSeq_inst::TExt &ext, ECallMode)=0

ECallMode

This flag can be used for optimization purpose.

virtual void SetDescr(const CBioseq_Handle &, const CSeq_descr &, ECallMode)=0

virtual void SetSeqInstLength(const CBioseq_Handle &, CSeq_inst::TLength, ECallMode)=0

virtual void ResetSeqInstRepr(const CBioseq_Handle &, ECallMode)=0

virtual void SetSeqInstRepr(const CBioseq_Handle &, CSeq_inst::TRepr, ECallMode)=0

virtual void ResetBioseqSetLevel(const CBioseq_set_Handle &, ECallMode)=0

virtual void ResetBioseqSetRelease(const CBioseq_set_Handle &, ECallMode)=0

virtual void Add(const CSeq_annot_Handle &handle, const CSeq_feat &obj, ECallMode)=0

virtual void SetSeqInstSeq_data(const CBioseq_Handle &handle, const CSeq_inst::TSeq_data &data, ECallMode)=0

virtual void ResetBioseqSetColl(const CBioseq_set_Handle &, ECallMode)=0

virtual void SetBioseqSetRelease(const CBioseq_set_Handle &, const CBioseq_set::TRelease &, ECallMode)=0

virtual void AddDesc(const CBioseq_Handle &, const CSeqdesc &, ECallMode)=0

virtual void RemoveDesc(const CBioseq_Handle &, const CSeqdesc &, ECallMode)=0

virtual void ResetBioseqSetClass(const CBioseq_set_Handle &, ECallMode)=0

virtual void ResetSeqInstStrand(const CBioseq_Handle &, ECallMode)=0

virtual void SetBioseqSetColl(const CBioseq_set_Handle &, const CBioseq_set::TColl &, ECallMode)=0

virtual void AddDescr(const CBioseq_Handle &, const CSeq_descr &, ECallMode)=0

Description operations.

virtual void ResetBioseqSetId(const CBioseq_set_Handle &, ECallMode)=0

virtual void AddId(const CBioseq_Handle &, const CSeq_id_Handle &, ECallMode)=0

ID operation.

virtual void RemoveTSE(const CTSE_Handle &handle, ECallMode)=0

virtual void ResetSeqInstMol(const CBioseq_Handle &, ECallMode)=0

virtual void SetBioseqSetLevel(const CBioseq_set_Handle &, CBioseq_set::TLevel, ECallMode)=0

virtual void ResetSeqInstSeq_data(const CBioseq_Handle &, ECallMode)=0

virtual void ResetSeqInst(const CBioseq_Handle &, ECallMode)=0

virtual void Attach(const CBioObjectId &old_id, const CSeq_entry_Handle &entry, const CBioseq_Handle &what, ECallMode)=0

virtual void RemoveId(const CBioseq_Handle &, const CSeq_id_Handle &, ECallMode)=0

virtual void ResetSeqInstHist(const CBioseq_Handle &, ECallMode)=0

virtual void SetSeqInstStrand(const CBioseq_Handle &handle, CSeq_inst::TStrand strand, ECallMode)=0

virtual void SetSeqInstMol(const CBioseq_Handle &, CSeq_inst::TMol, ECallMode)=0

virtual void ResetDescr(const CBioseq_Handle &, ECallMode)=0

virtual void SetSeqInstFuzz(const CBioseq_Handle &handle, const CSeq_inst::TFuzz &fuzz, ECallMode)=0

virtual void SetSeqInstTopology(const CBioseq_Handle &handle, CSeq_inst::TTopology topology, ECallMode)=0

virtual void ResetSeqInstExt(const CBioseq_Handle &, ECallMode)=0

virtual void SetBioseqSetId(const CBioseq_set_Handle &, const CBioseq_set::TId &, ECallMode)=0

virtual void Detach(const CSeq_entry_Handle &entry, const CBioseq_Handle &what, ECallMode)=0

virtual void SetBioseqSetClass(const CBioseq_set_Handle &, CBioseq_set::TClass, ECallMode)=0

virtual void ResetSeqInstTopology(const CBioseq_Handle &, ECallMode)=0

virtual void ResetSeqInstFuzz(const CBioseq_Handle &, ECallMode)=0

EErrCode

Error types that an application can generate.

virtual const char * GetErrCodeString(void) const

Get error code interpreted as text.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_XOBJMGR_EXPORT

ERepr

representation class

ETopology

topology of molecule

EMol

molecule class in living organism

EStrand

strandedness in living organism

Defines NCBI C++ exception handling.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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