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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/unittestsource__edit_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/edit/unit_test/unit_test_source_edit.cpp Source File

84

arg_desc->AddFlag(

"debug_mode"

,

85 "Debugging mode writes errors seen for each test"

);

93 if

(args[

"debug_mode"

]) {

102

src.

().SetTaxname(

"Norovirus"

);

109 if

((*orgmod)->IsSetSubtype())

117

src.

().SetTaxname(

"Norovirus"

);

123 if

((*db)->IsSetDb())

133

src.

().SetTaxname(

"Norovirus"

);

143

src.

().SetCommon(

"common name for Norovirus"

);

145

list<string> synonyms;

146

synonyms.push_back(

"syn1"

);

147

synonyms.push_back(

"syn2"

);

148

src.

().SetSyn() = synonyms;

153 if

((*db)->IsSetDb())

158 if

((*orgmod)->IsSetSubtype())

172 if

((*it)->GetSubtype() == subtype &&

((*it)->GetSubname(),

)) {

187

BOOST_CHECK(!common);

190

src1->

().SetTaxname(

"Pneumocystis carinii"

);

192 tag

->SetDb(

"taxon"

);

193 tag

->SetTag().SetId(142052);

194

src1->

().SetDb().push_back(

);

197 mod

->SetSubname(

"rattus-tertii"

);

198

src1->

().SetOrgname().SetMod().push_back(

);

207

BOOST_CHECK_EQUAL(common->

().

(),

"Pneumocystis carinii"

);

216

src1->

().SetTaxname(

"Eremothecium gossypii ATCC 10895"

);

222

src2->

().SetTaxname(

"Ashbya gossypii ATCC 10895"

);

228

BOOST_CHECK_EQUAL(common->

().

(),

"Eremothecium gossypii ATCC 10895"

);

244

BOOST_CHECK_EQUAL(common->

().

(),

"Salmonella enterica subsp. enterica serovar Typhimurium str. LT2"

);

256

BOOST_CHECK_EQUAL(common->

().

(),

"Salmonella enterica subsp. enterica serovar Typhimurium"

);

267

BOOST_CHECK_EQUAL(common->

().

(),

"Salmonella enterica subsp. enterica"

);

278

BOOST_CHECK(!common);

283

src2->

().SetDb().front()->SetTag().SetId(1069680);

284

src2->

().SetTaxname(

"Pneumocystis murina B123"

);

285

src2->

().SetOrgname().ResetMod();

289

src2->

().SetOrgname().SetMod().push_back(strain);

293

src2->

().SetOrgname().SetMod().push_back(subsp);

295

BOOST_CHECK(!common);

static CNcbiApplication * Instance(void)

Singleton method.

@OrgMod.hpp User-defined methods of the data storage class.

virtual const CArgs & GetArgs(void) const

Get parsed command line arguments.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

void CleanupForTaxnameChange(CObjectInfo oi)

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

@ eNocase

Case insensitive compare.

const TOrg & GetOrg(void) const

Get the Org member data.

void SetGenome(TGenome value)

Assign a value to Genome data member.

bool IsSetGenome(void) const

Check if a value has been assigned to Genome data member.

void ResetOrg(void)

Reset Org data member.

void SetOrg(TOrg &value)

Assign a value to Org data member.

const TMod & GetMod(void) const

Get the Mod member data.

void SetSubtype(TSubtype value)

Assign a value to Subtype data member.

const TTaxname & GetTaxname(void) const

Get the Taxname member data.

bool IsSetMod(void) const

Check if a value has been assigned to Mod data member.

list< CRef< COrgMod > > TMod

bool IsSetOrgname(void) const

Check if a value has been assigned to Orgname data member.

bool IsSetSyn(void) const

synonyms for taxname or common Check if a value has been assigned to Syn data member.

void SetSubname(const TSubname &value)

Assign a value to Subname data member.

const TOrgname & GetOrgname(void) const

Get the Orgname member data.

@ eSubtype_culture_collection

@ eSubtype_forma_specialis

Defines the CNcbiApplication and CAppException classes for creating NCBI applications.

Utility macros and typedefs for exploring NCBI objects from seqfeat.asn.

#define FOR_EACH_DBXREF_ON_ORGREF(Itr, Var)

FOR_EACH_DBXREF_ON_ORGREF EDIT_EACH_DBXREF_ON_ORGREF.

#define FOR_EACH_ORGMOD_ON_BIOSOURCE(Itr, Var)

FOR_EACH_ORGMOD_ON_BIOSOURCE EDIT_EACH_ORGMOD_ON_BIOSOURCE.

CRef< CBioSource > MakeCommonBioSource(const objects::CBioSource &src1, const objects::CBioSource &src2)

bool RemoveOldName(objects::CBioSource &src)

bool RemoveTaxId(objects::CBioSource &src)

Utility stuff for more convenient using of Boost.Test library.

const char * sc_TestEntry_FixOrgnames

NCBITEST_INIT_CMDLINE(arg_desc)

bool s_HasOrgMod(const COrg_ref &org, COrgMod::ESubtype subtype, const string &val)

BOOST_AUTO_TEST_CASE(Test_RemoveOldName)

void SetOrgMod(objects::CBioSource &src, objects::COrgMod::TSubtype subtype, string val)

void SetDbxref(objects::CBioSource &src, string db, objects::CObject_id::TId id)

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