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NCBI C++ ToolKit: src/algo/sequence/unit_test/unit_test_polya.cpp Source File

arg_desc->AddKey(

,

,

,

cerr <<

<<

<< endl;

(feat_it->GetData().GetRegion() ==

)

expected_polya = feat_it->GetRange();

BOOST_CHECK_EQUAL( expected_polya, actual_polya );

static CNcbiApplication * Instance(void)

Singleton method.

virtual const CArgs & GetArgs(void) const

Get parsed command line arguments.

@ eInputFile

Name of file (must exist and be readable)

@ eSerial_AsnText

ASN.1 text.

static CObjectIStream * Open(ESerialDataFormat format, CNcbiIstream &inStream, bool deleteInStream)

Create serial object reader and attach it to an input stream.

static CRef< CObjectManager > GetInstance(void)

Return the existing object manager or create one.

CSeq_entry_Handle AddTopLevelSeqEntry(CSeq_entry &top_entry, TPriority pri=kPriority_Default, EExist action=eExist_Default)

Add seq_entry, default priority is higher than for defaults or loaders Add object to the score with p...

void AddDefaults(TPriority pri=kPriority_Default)

Add default data loaders from object manager.

@ eCoding_Iupac

Set coding to printable coding (Iupacna or Iupacaa)

const_iterator begin(void) const

const_iterator end(void) const

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

@ e_Region

named region (globin locus)

const TSeq & GetSeq(void) const

Get the variant data.

Defines the CNcbiApplication and CAppException classes for creating NCBI applications.

Defines command line argument related classes.

Defines unified interface to application:

EPolyTail FindPolyTail(Iterator begin, Iterator end, TSignedSeqPos &cleavageSite, TSeqPos min_length=1)

PRE : two random access iterators pointing to sequence data [begin, end); minimum length for tail POS...

CRef< objects::CObjectManager > om

Utility stuff for more convenient using of Boost.Test library.

BOOST_AUTO_TEST_CASE(TestUsingArg)

NCBITEST_INIT_CMDLINE(arg_desc)

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