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NCBI C++ ToolKit: src/objtools/import/unit_test/unit_test_import.cpp Source File

& testEntry,

vector<string>& commandArgs)

vector<string> testParts;

(testParts.empty()) {

inputFile = testParts[0];

lastDot = inputFile.find_last_of(

);

inputFormat = inputFile.substr(lastDot + 1);

commandArgs.assign(testParts.begin() + 1, testParts.end());

& testName,

& testFormat)

singleCase = args[

].AsString();

(!singleCase.empty()) {

(singleCase != testName);

singleFormat = args[

].AsString();

(!singleFormat.empty()) {

(singleFormat != testFormat);

& testName,

vector<string>& commandArgs,

& inputName,

& goldenNameAnnot,

& goldenNameErrors,

& outputNameAnnot,

& outputNameErrors,

& diffName,

cerr <<

<< testName <<

;

unique_ptr<CFeatImporter> pImporter(

pImporter->ReadSeqAnnot(iStr, annot);

& annotData = annot.

();

(!annotData.IsFtable() || annotData.GetFtable().empty()) {

(std::exception& err) {

BOOST_ERROR(

<< testName <<

);

BOOST_ERROR(

<< err.what());

msgHandler.

(oStrErrors);

<< testName <<

);

(!successErrors) {

<< testName <<

);

arg_descrs->AddDefaultKey(

,

,

arg_descrs->AddDefaultKey(

,

arg_descrs->AddDefaultKey(

,

,

,

arg_descrs->AddFlag(

,

,

( args[

].AsString() );

updateAll = args[

].AsBoolean();

keepDiffs = args[

].AsBoolean();

fileTestCases(

+

+

);

dirInput(

+

);

dirGolden(

+

);

dirOutput(

+

);

dirDiffs(

+

);

BOOST_REQUIRE_MESSAGE(

(fileTestCases).Exists(),

<< fileTestCases);

(

oldFile: oldOutputFiles) {

(!testCaseStream.AtEOF()) {

testDescription = *(++testCaseStream);

(testDescription.empty()) {

testName, inputFile, inputFormat;

vector<string> commandArgs;

BOOST_REQUIRE_MESSAGE(

<< testDescription <<

);

(

(args, testName, inputFormat)) {

inFile = dirInput + inputFile;

goldenFile = dirGolden + testName +

;

errorsFile = dirGolden + testName +

;

outputFileAnnot = dirOutput + testName +

;

outputFileErrors = dirOutput + testName +

;

diffsFile =

;

diffsFile = dirDiffs + testName +

;

BOOST_CHECK_NO_THROW(

testName, inputFormat, commandArgs,

inFile, goldenFile, errorsFile,

outputFileAnnot, outputFileErrors, diffsFile,

static CFeatImporter * Get(const std::string &, unsigned int, CImportMessageHandler &)

CImportError::ErrorLevel GetWorstErrorLevel() const

void Dump(CNcbiOstream &out)

static CNcbiApplication * Instance(void)

Singleton method.

Simple implementation of ILineReader for i(o)streams.

static int RunTests(void)

Code to iterate through all tests to run.

virtual const CArgs & GetArgs(void) const

Get parsed command line arguments.

@ eString

An arbitrary string.

TEntries GetEntries(const string &mask=kEmptyStr, TGetEntriesFlags flags=0) const

Get directory entries based on the specified "mask".

virtual bool Copy(const string &new_path, TCopyFlags flags=fCF_Default, size_t buf_size=0) const

Copy a file.

virtual bool Remove(TRemoveFlags flags=eRecursive) const

Remove a directory entry.

bool CompareTextContents(const string &file, ECompareText mode, size_t buf_size=0) const

Compare files contents in text form.

@ fCF_Overwrite

The following flags define what to do when the destination entry already exists:

@ fIgnoreRecursive

Suppress "self recursive" elements (the directories "." and "..").

IO_PREFIX::ofstream CNcbiOfstream

Portable alias for ofstream.

IO_PREFIX::ifstream CNcbiIfstream

Portable alias for ifstream.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static void TruncateSpacesInPlace(string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string (in-place)

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool SplitInTwo(const CTempString str, const CTempString delim, string &str1, string &str2, TSplitFlags flags=0)

Split a string into two pieces using the specified delimiters.

#define NCBITEST_INIT_CMDLINE(var_name)

Macro for introducing function initializing argument descriptions for tests.

#define NCBITEST_AUTO_FINI()

Macro for introducing finalization function which will be called after actual tests execution even if...

#define NCBITEST_AUTO_INIT()

Macro for introducing initialization function which will be called before tests execution and only if...

const TData & GetData(void) const

Get the Data member data.

The blob sat and sat key Both must be positive integers</td > n< td > Non empty string The interpretation of the blob id depends on a processor Cassandra n processor expects the following format

Lightweight interface for getting lines of data with minimal memory copying.

Defines the CNcbiApplication and CAppException classes for creating NCBI applications.

Defines classes: CDirEntry, CFile, CDir, CSymLink, CMemoryFile, CFileUtil, CFileLock,...

Utility stuff for more convenient using of Boost.Test library.

bool sSkipTest(const CArgs &args, const string &testName, const string &testFormat)

void sRunTest(const string &testName, const string &format, const vector< string > &commandArgs, const string &inputName, const string &goldenNameAnnot, const string &goldenNameErrors, const string &outputNameAnnot, const string &outputNameErrors, const string &diffName, bool updateAll)

bool sGetTestParameters(const string &testEntry, string &testName, string &inputFile, string &inputFormat, vector< string > &commandArgs)

BOOST_AUTO_TEST_CASE(TestUsingArg)

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