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NCBI C++ ToolKit: src/app/table2asn/unit_test_hugeannot.cpp Source File

Go to the SVN repository for this file.

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reader.

(

, 0);

BOOST_TEST(reader.

() == 15);

(

&

: ids) {

(

& found_id: found) {

= found_id->AsFastaString();

std::cout <<

.fasta_search <<

<<

<<

;

BOOST_TEST(fasta ==

.fasta_expected);

void Open(const std::string &filename)

size_t index_size() const

std::list< CRef< objects::CSeq_id > > FindAnnots(CRef< objects::CSeq_id > seqid) const

void Init(const std::string &genome_center_id, long reader_flags, TLogger *logger=nullptr)

size_t unused_annots() const

std::string_view fasta_search

std::string_view fasta_expected

#define test(a, b, c, d, e)

static int RunTests(void)

Code to iterate through all tests to run.

const string AsFastaString(void) const

static SIZE_TYPE ParseIDs(CBioseq::TId &ids, const CTempString &s, TParseFlags flags=fParse_Default)

Parse a string representing one or more Seq-ids, appending the results to IDS.

@ fParse_RawText

Try to ID raw non-numeric accessions.

@ fParse_PartialOK

Warn rather than throwing an exception when a FASTA-style ID set contains unparsable portions,...

@ fParse_ValidLocal

Treat otherwise unidentified strings as raw accessions, provided that they pass rudimentary validatio...

list< CRef< CSeq_id > > TId

Magic spell ;-) needed for some weird compilers... very empiric.

Utility stuff for more convenient using of Boost.Test library.

BOOST_AUTO_TEST_CASE(RunTests)

static constexpr CTestData test_cases[]

static constexpr std::string_view s_five_column_data

bool IdRefLess(const CRef< CSeq_id > &id1, const CRef< CSeq_id > &id2)

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