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83 const string& content,
92BOOST_CHECK_EQUAL(
label, content);
96BOOST_CHECK_EQUAL(
label, ftype);
100 if(
label!= both) {
101cout <<
"error: '"<<
label<<
"' != '"<< both <<
"'"<< endl;
103BOOST_CHECK_EQUAL(
label, both);
119 "/rpt_family=repeat family /rpt_type=inverted /rpt_type=tandem /rpt_unit_range=4..7 /rpt_unit_seq=aatt; tumour",
121 "[misc_feature]: /rpt_family=repeat family /rpt_type=inverted /rpt_type=tandem /rpt_unit_range=4..7 /rpt_unit_seq=aatt; tumour");
123 "neuronal thread protein AD7c-NTP",
125 "CDS: neuronal thread protein AD7c-NTP");
129 "neuronal thread protein AD7c-NTP",
131 "Prot: neuronal thread protein AD7c-NTP");
134 "proprotein",
"proprotein",
"proprotein: ");
136 "mat_peptide",
"mat_peptide",
"mat_peptide: ");
138 "sig_peptide",
"sig_peptide",
"sig_peptide: ");
140 "transit_peptide",
"transit_peptide",
"transit_peptide: ");
155 accession \"AF010144\",\ 164 seq-data iupacna \"TTTTTTTTTTTGAGATGGAGTTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAA\ 165 TGGCGCAATCTCAGCTCACCGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCCAGTAGCTGG\ 166 GATTACAGGCATGTGCACCCACGCTCGGCTAATTTTGTATTTTTTTTTAGTAGAGATGGAGTTTCTCCATGTTGGTCA\ 167 GGCTGGTCTCGAACTCCCGACCTCAGATGATCCCTCCGTCTCGGCCTCCCAAAGTGCTAGATACAGGACTGGCCACCA\ 168 TGCCCGGCTCTGCCTGGCTAATTTTTGTGGTAGAAACAGGGTTTCACTGATGTGCCCAAGCTGGTCTCCTGAGCTCAA\ 169 GCAGTCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGCAGCCGTGCCTGGCCTTTTTATTTTATTTTT\ 170 TTTAAGACACAGGTGTCCCACTCTTACCCAGGATGAAGTGCAGTGGTGTGATCACAGCTCACTGCAGCCTTCAACTCC\ 171 TGAGATCAAGCATCCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACCAAAGACATGCACCACTACACCTGGCTAATTTT\ 172 TATTTTTATTTTTAATTTTTTGAGACAGAGTCTCAACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTC\ 173 ACTGCAACCTCTGCCTCCCGGGTTCAAGTTATTCTCCTGCCCCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCACC\ 174 ACGCCTAGCTAATTTTTTTGTATTTTTAGTAGAGATGGGGTTCACCATGTTCGCCAGGTTGATCTTGATCTCTGGACC\ 175 TTGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCGGCTTATTTTTAATTT\ 176 TTGTTTGTTTGAAATGGAATCTCACTCTGTTACCCAGGCTGGAGTGCAATGGCCAAATCTCGGCTCACTGCAACCTCT\ 177 GCCTCCCGGGCTCAAGCGATTCTCCTGTCTCAGCCTCCCAAGCAGCTGGGATTACGGGCACCTGCCACCACACCCCGC\ 178 TAATTTTTGTATTTTCATTAGAGGCGGGGTTTCACCATATTTGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGACC\ 179 CACCTGCCTCAGCCTTCCAAAGTGCTGGGATTACAGGCGTGAGCCACCTCACCCAGCCGGCTAATTTAGATAAAAAAA\ 180 TATGTAGCAATGGGGGGTCTTGCTATGTTGCCCAGGCTGGTCTCAAACTTCTGGCTTCATGCAATCCTTCCAAATGAG\ 181 CCACAACACCCAGCCAGTCACATTTTTTAAACAGTTACATCTTTATTTTAGTATACTAGAAAGTAATACAATAAACAT\ 182 GTCAAACCTGCAAATTCAGTAGTAACAGAGTTCTTTTATAACTTTTAAACAAAGCTTTAGAGCA\"\ 184 annot { { data ftable {\ 186 data imp { key \"misc_feature\" },\ 188 location int { from 0, to 374, id gi 3002526 },\ 190 {qual \"rpt_family\", val \"repeat family\"},\ 191 {qual \"rpt_type\", val \"inverted\"},\ 192 {qual \"rpt_type\", val \"tandem\"},\ 193 {qual \"rpt_unit_range\", val \"4..7\"},\ 194 {qual \"rpt_unit_seq\", val \"aatt\"}\ 202 accession \"AAC08737\",\ 212 seq-data ncbieaa \"MEFSLLLPRLECNGAISAHRNLRLPGSSDSPASASPVAGITGMCTHARLILY\ 213 FFLVEMEFLHVGQAGLELPTSDDPSVSASQSARYRTGHHARLCLANFCGRNRVSLMCPSWSPELKQSTCLSLPKCWDY\ 214 RRAAVPGLFILFFLRHRCPTLTQDEVQWCDHSSLQPSTPEIKHPPASASQVAGTKDMHHYTWLIFIFIFNFLRQSLNS\ 215 VTQAGVQWRNLGSLQPLPPGFKLFSCPSLLSSWDYRRPPRLANFFVFLVEMGFTMFARLILISGPCDLPASASQSAGI\ 216 TGVSHHARLIFNFCLFEMESHSVTQAGVQWPNLGSLQPLPPGLKRFSCLSLPSSWDYGHLPPHPANFCIFIRGGVSPY\ 223 data prot { processed preprotein },\ 224 location int { from 0, to 374, id gi 3002527 }\ 227 data prot { processed mature },\ 228 location int { from 0, to 374, id gi 3002527 }\ 231 data prot { processed signal-peptide },\ 232 location int { from 0, to 374, id gi 3002527 }\ 235 data prot { processed transit-peptide },\ 236 location int { from 0, to 374, id gi 3002527 }\ 241 \"neuronal thread protein AD7c-NTP\"\ 266 product whole gi 3002527,\User-defined methods of the data storage class.
User-defined methods of the data storage class.
User-defined methods of the data storage class.
User-defined methods of the data storage class.
User-defined methods of the data storage class.
@ eSubtype_transit_peptide_aa
@ eSubtype_sig_peptide_aa
@ eSubtype_mat_peptide_aa
#define MSerial_AsnText
I/O stream manipulators â.
string GetLabel(const CSeq_id &id)
@ fFGL_Content
Include its content if there is any.
@ fFGL_Type
Always include the feature's type.
static CRef< CObjectManager > GetInstance(void)
Return the existing object manager or create one.
CSeq_entry_Handle AddTopLevelSeqEntry(CSeq_entry &top_entry, TPriority pri=kPriority_Default, EExist action=eExist_Default)
Add seq_entry, default priority is higher than for defaults or loaders Add object to the score with p...
CScope & GetScope(void) const
Get scope this handle belongs to.
static const char label[]
@ eMol_na
just a nucleic acid
Utility stuff for more convenient using of Boost.Test library.
void CheckOneFeatureType(CBioseq_Handle bsh, CSeqFeatData::ESubtype subtype, const string &content, const string &ftype, const string &both)
const string sc_TestEntry
BOOST_AUTO_TEST_CASE(Test_feature_GetLabel)
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