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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/unit__test__gene__utils_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/edit/unit_test/unit_test_gene_utils.cpp Source File

Go to the documentation of this file.

Go to the SVN repository for this file.

68

cout <<

"Initialization function executed"

<< endl;

76

(

"enable_TestTimeout"

,

77  "Run TestTimeout test, which is artificially disabled by default in" 78  "order to avoid unwanted failure during the daily automated builds."

);

85

cout <<

"Finalization function executed"

<< endl;

95

gene->

SetId

().SetLocal().SetId(1);

101

feat->

SetXref

().front()->SetId().SetLocal().SetId(1);

102

feat->

SetXref

().front()->SetData().SetGene().SetLocus(

"gene locus"

);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

void SetGeneXref(CGene_ref &value)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

CConstRef< CSeq_feat > GetGeneForFeature(const CSeq_feat &feat, CScope &scope)

Finds gene for feature, but obeys SeqFeatXref directives.

void Reset(void)

Reset reference object.

TXref & SetXref(void)

Assign a value to Xref data member.

void SetId(TId &value)

Assign a value to Id data member.

TSet & SetSet(void)

Select the variant.

TAnnot & SetAnnot(void)

Assign a value to Annot data member.

Defines the CNcbiApplication and CAppException classes for creating NCBI applications.

Utility stuff for more convenient using of Boost.Test library.

#define NCBITEST_CHECK_MESSAGE(P, M)

NCBITEST_INIT_CMDLINE(arg_desc)

BOOST_AUTO_TEST_CASE(Test_GetGeneForFeature)

CRef< objects::CSeq_feat > MakeGeneForFeature(CRef< objects::CSeq_feat > feat)

CRef< objects::CSeq_feat > GetCDSFromGoodNucProtSet(CRef< objects::CSeq_entry > entry)

CRef< objects::CSeq_annot > AddFeat(CRef< objects::CSeq_feat > feat, CRef< objects::CSeq_entry > entry)

CRef< objects::CSeq_entry > BuildGoodNucProtSet(void)

CRef< objects::CSeq_feat > MakeCDSForGoodNucProtSet(const string &nuc_id, const string &prot_id)

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