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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/unified__pvalues_8c_source.html below:

NCBI C++ ToolKit: src/algo/blast/composition_adjustment/unified_pvalues.c Source File

{ 1.247750e-07, 1.247750e-07, 1.247750e-07, 1.247750e-07, 1.247750e-07,

1.247750e-07, 1.247750e-07, 1.247750e-07, 1.247750e-07, 1.247750e-07,

1.247750e-07, 1.247750e-07, 2.495500e-07,

2.495500e-07, 2.495500e-07, 2.495500e-07, 2.495500e-07, 2.495500e-07,

2.495500e-07, 2.495500e-07, 2.495500e-07,

2.495500e-07, 3.743250e-07, 4.991000e-07, 4.991000e-07, 4.991000e-07,

4.991000e-07, 7.486490e-07, 7.486490e-07,

7.486490e-07, 7.486490e-07, 8.734240e-07, 9.981990e-07, 9.981990e-07,

1.122974e-06, 1.122974e-06, 1.372523e-06,

1.497298e-06, 1.622073e-06, 1.871622e-06, 1.871622e-06, 1.996397e-06,

2.370721e-06, 2.620270e-06, 2.620270e-06,

2.620270e-06, 2.745045e-06, 2.745045e-06, 2.745045e-06, 2.745045e-06,

2.869820e-06, 3.493695e-06, 3.493695e-06,

3.493695e-06, 3.868019e-06, 4.117568e-06, 4.367117e-06, 4.866216e-06,

4.866216e-06, 5.240540e-06, 5.240540e-06,

5.864415e-06, 6.363514e-06, 6.737838e-06, 7.236937e-06, 7.860812e-06,

8.110361e-06, 8.484685e-06, 9.233334e-06,

9.857209e-06, 1.035631e-05, 1.060586e-05, 1.085541e-05, 1.210316e-05,

1.272703e-05, 1.322613e-05, 1.409955e-05,

1.509775e-05, 1.647027e-05, 1.784279e-05, 1.859144e-05, 1.921532e-05,

2.008874e-05, 2.133649e-05, 2.245946e-05,

2.333288e-05, 2.445585e-05, 2.557882e-05, 2.732567e-05, 2.832387e-05,

3.019549e-05, 3.231666e-05, 3.468738e-05,

3.568558e-05, 3.718288e-05, 3.942882e-05, 4.292251e-05, 4.479413e-05,

4.666575e-05, 4.903647e-05, 5.140719e-05,

5.352836e-05, 5.539998e-05, 5.714683e-05, 5.964232e-05, 6.263691e-05,

6.550673e-05, 6.825177e-05, 7.124636e-05,

7.411618e-05, 7.611258e-05, 7.910717e-05, 8.235131e-05, 8.534590e-05,

8.971302e-05, 9.457923e-05, 9.907112e-05,

1.028144e-04, 1.068072e-04, 1.124220e-04, 1.150423e-04, 1.202828e-04,

1.241509e-04, 1.297657e-04, 1.352558e-04,

1.408707e-04, 1.474838e-04, 1.535977e-04, 1.605851e-04, 1.679469e-04,

1.766811e-04, 1.849162e-04, 1.943991e-04,

2.023847e-04, 2.111190e-04, 2.208514e-04, 2.298352e-04, 2.390685e-04,

2.500487e-04, 2.599059e-04, 2.705118e-04,

2.826149e-04, 2.953419e-04, 3.058230e-04, 3.209207e-04, 3.336477e-04,

3.469986e-04, 3.607238e-04, 3.758215e-04,

3.915431e-04, 4.100098e-04, 4.283517e-04, 4.454458e-04, 4.661584e-04,

4.845003e-04, 5.032165e-04, 5.194372e-04,

5.399003e-04, 5.642314e-04, 5.905589e-04, 6.173855e-04, 6.407184e-04,

6.646751e-04, 6.896300e-04, 7.199503e-04,

7.487733e-04, 7.780954e-04, 8.119093e-04, 8.442260e-04, 8.782895e-04,

9.142246e-04, 9.507836e-04, 9.890894e-04,

1.025898e-03, 1.060710e-03, 1.102010e-03, 1.141065e-03, 1.179870e-03,

1.225413e-03, 1.268086e-03, 1.313254e-03,

1.362665e-03, 1.413199e-03, 1.465479e-03, 1.514516e-03, 1.568668e-03,

1.620325e-03, 1.678595e-03, 1.738861e-03,

1.800375e-03, 1.863511e-03, 1.933760e-03, 1.999641e-03, 2.066271e-03,

2.136269e-03, 2.208639e-03, 2.282256e-03,

2.363235e-03, 2.451451e-03, 2.535050e-03, 2.626385e-03, 2.715973e-03,

2.811676e-03, 2.906879e-03, 3.008695e-03,

3.108390e-03, 3.220687e-03, 3.337351e-03, 3.458507e-03, 3.587275e-03,

3.717165e-03, 3.853419e-03, 3.998407e-03,

4.150882e-03, 4.307349e-03, 4.470305e-03, 4.650105e-03, 4.835520e-03,

5.028047e-03, 5.239291e-03, 5.459394e-03,

5.699835e-03, 5.944019e-03, 6.201679e-03, 6.472939e-03, 6.767532e-03,

7.067490e-03, 7.402760e-03, 7.779704e-03,

8.163261e-03, 8.581007e-03, 9.043672e-03, 9.538778e-03, 1.006046e-02,

1.061571e-02, 1.121351e-02, 1.187918e-02,

1.259427e-02, 1.336213e-02, 1.420611e-02, 1.510486e-02, 1.609220e-02,

1.716439e-02, 1.831930e-02, 1.961309e-02,

2.100770e-02, 2.254767e-02, 2.423026e-02, 2.604985e-02, 2.803414e-02,

3.023304e-02, 3.261836e-02, 3.527531e-02,

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1.170782e-01, 1.282548e-01, 1.405027e-01,

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4.580085e-01, 4.895437e-01, 5.211873e-01,

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8.410031e-01, 8.531792e-01, 8.642644e-01,

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9.688645e-01, 9.706878e-01, 9.723798e-01,

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9.876234e-01, 9.882862e-01, 9.889344e-01,

9.895357e-01, 9.901063e-01, 9.906435e-01, 9.911373e-01, 9.916119e-01,

9.920576e-01, 9.924838e-01, 9.928730e-01,

9.932470e-01, 9.935931e-01, 9.939352e-01, 9.942430e-01, 9.945419e-01,

9.948185e-01, 9.950818e-01, 9.953442e-01,

9.955881e-01, 9.958246e-01, 9.960354e-01, 9.962523e-01, 9.964441e-01,

9.966252e-01, 9.967933e-01, 9.969595e-01,

9.971159e-01, 9.972685e-01, 9.974102e-01, 9.975482e-01, 9.976761e-01,

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9.980933e-01, 9.981938e-01, 9.982869e-01, 9.983711e-01, 9.984526e-01,

9.985349e-01, 9.986089e-01, 9.986793e-01,

9.987437e-01, 9.988027e-01, 9.988587e-01, 9.989131e-01, 9.989656e-01,

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9.994278e-01, 9.994549e-01, 9.994825e-01, 9.995078e-01, 9.995336e-01,

9.995536e-01, 9.995732e-01, 9.995946e-01,

9.996155e-01, 9.996358e-01, 9.996535e-01, 9.996697e-01, 9.996842e-01,

9.996983e-01, 9.997115e-01, 9.997263e-01,

9.997404e-01, 9.997520e-01, 9.997612e-01, 9.997721e-01, 9.997834e-01,

9.997917e-01, 9.998010e-01, 9.998097e-01,

9.998197e-01, 9.998272e-01, 9.998347e-01, 9.998427e-01, 9.998504e-01,

9.998564e-01, 9.998629e-01, 9.998688e-01,

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9.999094e-01, 9.999134e-01, 9.999174e-01, 9.999209e-01, 9.999240e-01,

9.999275e-01, 9.999312e-01, 9.999336e-01,

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9.999608e-01, 9.999623e-01, 9.999636e-01,

9.999655e-01, 9.999665e-01, 9.999680e-01, 9.999691e-01, 9.999702e-01,

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9.999792e-01, 9.999801e-01, 9.999807e-01,

9.999813e-01, 9.999816e-01, 9.999826e-01, 9.999831e-01, 9.999834e-01,

9.999836e-01, 9.999838e-01, 9.999841e-01,

9.999846e-01, 9.999854e-01, 9.999856e-01, 9.999859e-01, 9.999870e-01,

9.999874e-01, 9.999882e-01, 9.999885e-01,

9.999890e-01, 9.999892e-01, 9.999892e-01, 9.999893e-01, 9.999895e-01,

9.999900e-01, 9.999904e-01, 9.999907e-01,

9.999909e-01, 9.999914e-01, 9.999917e-01, 9.999923e-01, 9.999923e-01,

9.999925e-01, 9.999928e-01, 9.999932e-01,

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9.999950e-01, 9.999950e-01, 9.999952e-01,

9.999954e-01, 9.999955e-01, 9.999957e-01, 9.999957e-01, 9.999959e-01,

9.999959e-01, 9.999960e-01, 9.999960e-01,

9.999962e-01, 9.999963e-01, 9.999965e-01, 9.999965e-01, 9.999967e-01,

9.999967e-01, 9.999968e-01, 9.999973e-01,

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9.999977e-01, 9.999977e-01, 9.999979e-01,

9.999979e-01, 9.999979e-01, 9.999982e-01, 9.999983e-01, 9.999984e-01,

9.999985e-01, 9.999985e-01, 9.999985e-01,

9.999985e-01, 9.999985e-01, 9.999985e-01, 9.999985e-01, 9.999985e-01,

9.999987e-01, 9.999987e-01, 9.999988e-01,

9.999988e-01, 9.999988e-01, 9.999988e-01, 9.999989e-01, 9.999989e-01,

9.999989e-01, 9.999989e-01, 9.999992e-01

bin = ((

) initialUScore);

= initialUScore - bin;

product = p_comp * p_alignment;

product * (1.0 -

(product));

Constants used in compositional score matrix adjustment.

unsigned int

A callback function used to compare two keys in a database.

Int4 delta(size_t dimension_, const Int4 *score_)

double lambda(size_t dimMatrix_, const Int4 *const *scoreMatrix_, const double *q_)

double Blast_Overall_P_Value(double p_comp, double p_alignment)

This function implements the method of Fisher, R.

#define LAMBDA_BIN_TOTAL

total number of bins for the lambda distribution function

double Blast_CompositionPvalue(double lambda)

Conditionally compute a compositional p-value.

#define LOW_LAMBDA_BIN_CUT

Marks the boundary of the left tail of the lambda distribution; values of lambda that lie in the left...

static double P_lambda_table[565]

P_lambda_table is a discretized version of the empirical cumulative distribution function for the sta...

#define LAMBDA_BIN_SIZE

bin size when discretizing lambda distribution function

Headers for computing a "composition" p-value of a match, and for computing a unified p-value combini...

#define COMPO_MIN_LAMBDA

the smallest value of lambda in the table of lambda's empirical distribution function.

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