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NCBI C++ ToolKit: src/objtools/writers/ucsc_writer.cpp Source File

uFlags ) :

separator = separators;

separator.append(

);

from_loc = CurrInt.

();

to_loc = CurrInt.

();

<< from_loc + 1 << separator[1]

<< separator[2] << strand;

static CRef< CScope > m_Scope

User-defined methods of the data storage class.

User-defined methods of the data storage class.

namespace ncbi::objects::

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

bool WriteAnnot(const CSeq_annot &, const CTempString &separators="\t")

virtual ~CUCSCRegionWriter()

CUCSCRegionWriter(CScope &scope, CNcbiOstream &ostr, unsigned int flags=fNormal)

Constructor.

Defines and provides stubs for a general interface to a variety of file formatters.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

void GetLabel(string *label, ELabelType type=eDefault, TLabelFlags flags=fLabel_Default) const

Append a label for this Seq-id to the supplied string.

@ eContent

Untagged human-readable accession or the like.

void ChangeToPackedInt(void)

Works only if location is currently an interval, point, packed-int (handled trivially),...

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Override Assign() to incorporate cache invalidation.

const CSeq_id * GetId(void) const

Get the id of the location return NULL if has multiple ids or no id at all.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

static const char label[]

const TLocation & GetLocation(void) const

Get the Location member data.

bool IsSetLocation(void) const

feature made from Check if a value has been assigned to Location data member.

list< CRef< CSeq_interval > > Tdata

const Tdata & Get(void) const

Get the member data.

TFrom GetFrom(void) const

Get the From member data.

bool IsSetTo(void) const

Check if a value has been assigned to To data member.

bool IsSetStrand(void) const

Check if a value has been assigned to Strand data member.

TStrand GetStrand(void) const

Get the Strand member data.

TTo GetTo(void) const

Get the To member data.

bool IsSetFrom(void) const

Check if a value has been assigned to From data member.

const TPacked_int & GetPacked_int(void) const

Get the variant data.

const Tdata & Get(void) const

Get the member data.

bool IsSetData(void) const

Check if a value has been assigned to Data data member.

const TDesc & GetDesc(void) const

Get the Desc member data.

bool CanGetDesc(void) const

Check if it is safe to call GetDesc method.

bool IsUser(void) const

Check if variant User is selected.

const TFtable & GetFtable(void) const

Get the variant data.

list< CRef< CSeq_feat > > TFtable

bool IsFtable(void) const

Check if variant Ftable is selected.

const TData & GetData(void) const

Get the Data member data.

list< CRef< CAnnotdesc > > Tdata

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