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NCBI C++ ToolKit: include/objmgr/impl/tse_split_info.hpp Source File

GetBlobId(

)

;

LoadChunk(

)

;

LoadChunks(

& ids)

;

x_HasDelayedMainChunk(

)

;

x_NeedsDelayedMainChunk(

)

;

x_LoadDelayedMainChunk(

)

;

x_UpdateCore(

);

x_SetContainedSeqIds(

vector<TBioseqId>& seq_ids,

x_CanAddBioseq(

&

)

;

x_UpdateAnnotIndex(

);

GetBioseqsIds(

& ids)

;

()

{

m_ContainsBioseqs.load(memory_order_relaxed); }

x_GetRecords(

&

,

bioseq)

;

x_LoadChunk(

chunk_id)

;

x_LoadChunks(

TChunkIds& chunk_ids)

;

x_LoadDescr(

TPlace& place,

& descr);

x_LoadAnnot(

TPlace& place,

& annot,

chunk_id);

x_LoadBioseqs(

TPlace& place,

list<

>& bioseqs,

chunk_id);

x_LoadSequence(

TPlace& place,

pos,

TSequence& sequence);

x_LoadAssembly(

TBioseqId& seq_id,

TAssembly& assembly);

x_AddUsedMemory(

);

TSeqIdToChunks::const_iterator x_FindChunk(

&

)

;

@Seq_descr.hpp User-defined methods of the data storage class.

pair< TBioseqId, TBioseq_setId > TPlace

list< CRef< CSeq_align > > TAssembly

pair< TDescTypeMask, TPlace > TDescInfo

vector< TLocation > TLocationSet

list< CRef< CSeq_literal > > TSequence

void LoadChunks(const TChunkIds &ids) const

CTSE_Chunk_Info::TBioseqId TBioseqId

CTSE_Chunk_Info::TBioseq_setId TBioseq_setId

CTSE_Chunk_Info::TChunkId TChunkId

CDataSource * m_DataLoader

void x_SetBioseqChunkId(TChunkId chunk_id)

void x_LoadChunks(const TChunkIds &chunk_ids) const

map< CTSE_Info *, CRef< ITSE_Assigner > > TTSE_Set

CTSE_Chunk_Info::TAssembly TAssembly

TBlobVersion m_BlobVersion

CInitMutexPool m_MutexPool

TSeqIdToChunks m_SeqIdToChunks

TSplitVersion m_SplitVersion

CTSE_Chunk_Info::TDescInfo TDescInfo

CMutex m_SeqIdToChunksMutex

void LoadChunk(TChunkId id) const

atomic< bool > m_ContainsBioseqs

CTSE_Chunk_Info::TLocationSet TLocationSet

void x_LoadChunk(TChunkId chunk_id) const

bool ContainsBioseqs() const

vector< TChunkId > TChunkIds

CTSE_Split_Info & operator=(const CTSE_Split_Info &)

CTSE_Chunk_Info::TSequence TSequence

vector< CSeq_id_Handle > TSeqIds

CTSE_Chunk_Info::TPlace TPlace

vector< pair< CSeq_id_Handle, TChunkId > > TSeqIdToChunks

CTSE_Split_Info(const CTSE_Split_Info &)

map< TChunkId, CRef< CTSE_Chunk_Info > > TChunks

bool m_SeqIdToChunksSorted

CTSE_Chunk_Info::TAssemblyInfo TAssemblyInfo

static const char location[]

unsigned int TSeqPos

Type for sequence locations and lengths.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_XOBJMGR_EXPORT

E_Choice

Choice variants.

const string version

version string

const struct ncbi::grid::netcache::search::fields::SIZE size

Multi-threading – mutexes; rw-locks; semaphore.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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