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NCBI C++ ToolKit: include/objmgr/impl/tse_chunk_info.hpp Source File

pair<TBioseqId, TBioseq_setId>

;

GetBlobId(

)

;

NotLoaded(

)

;

IsLoaded(

)

;

Load(

)

;

x_AddAssemblyInfo(

&

);

x_AddAnnotPlace(

&

);

x_AddAnnotPlace(

& place);

x_AddBioseqId(

&

);

x_AddAnnotType(

& annot_name,

x_AddAnnotType(

& annot_name,

x_AddAnnotType(

& annot_name,

x_AddFeat_ids(

);

SetLoaded(

* obj = 0);

x_LoadDescr(

TPlace& place,

& descr);

x_LoadAnnot(

TPlace& place,

& annot);

x_LoadBioseq(

TPlace& place,

& bioseq);

x_LoadBioseqs(

TPlace& place,

list<

>& bioseqs);

x_LoadSequence(

TPlace& place,

pos,

TSequence& seq);

x_LoadAssembly(

TBioseqId& seq_id,

TAssembly& assembly);

x_AddUsedMemory(

);

m_AnnotPlaces;

m_BioseqPlaces;

m_AnnotContents;

m_AssemblyInfos;

GetLoadBytes()

;

GetLoadSeconds()

;

pair<Uint4, double> GetLoadCost()

;

x_SetLoadBytes(

bytes);

x_SetLoadSeconds(

seconds);

x_Attached(

)

;

x_GetRecords(

&

,

bioseq)

;

GetBioseqsIds(TBioseqIds& ids)

;

x_AnnotIndexNeedsUpdate()

;

x_UpdateAnnotIndex(

& tse);

x_UpdateAnnotIndexContents(

& tse);

x_DropAnnotObjects(

);

x_InitObjectIndexList(

);

@Seq_descr.hpp User-defined methods of the data storage class.

virtual void Loaded(CTSE_Chunk_Info &chunk)=0

vector< TDescInfo > TDescInfos

pair< TBioseqId, TBioseq_setId > TPlace

map< SAnnotTypeSelector, TLocationSet > TAnnotTypes

vector< TAssemblyInfo > TAssemblyInfos

CRef< CTSEChunkLoadListener > m_LoadListener

TObjectIndexList m_ObjectIndexList

CTSE_Chunk_Info & operator=(const CTSE_Chunk_Info &)

const TAnnotContents & GetAnnotContents(void) const

list< TFeatIdStr > TFeatIdStrList

Uint4 GetLoadBytes() const

list< CRef< CSeq_align > > TAssembly

CInitMutex< CObject > m_LoadLock

CTSE_Chunk_Info(const CTSE_Chunk_Info &)

CTSE_Split_Info * m_SplitInfo

pair< TDescTypeMask, TPlace > TDescInfo

vector< TBioseqId > TBioseqIds

TBioseqPlaces m_BioseqPlaces

vector< TLocation > TLocationSet

const TLocationSet & GetSeq_dataInfos(void) const

map< CAnnotName, TAnnotTypes > TAnnotContents

list< TObjectIndex > TObjectIndexList

CRange< TSeqPos > TLocationRange

TAnnotContents m_AnnotContents

CSeq_id_Handle TLocationId

TChunkId GetChunkId(void) const

double GetLoadSeconds() const

const TBioseqPlaces & GetBioseqPlaces(void) const

TAssemblyInfos m_AssemblyInfos

vector< TFeatIdInt > TFeatIdIntList

list< CRef< CSeq_literal > > TSequence

const TBioseqIds & GetBioseqIds(void) const

bool x_AnnotIndexNeedsUpdate() const

const TPlaces & GetAnnotPlaces(void) const

const CTSE_Split_Info & GetSplitInfo(void) const

pair< TLocationId, TLocationRange > TLocation

vector< TBioseq_setId > TBioseqPlaces

bool NotLoaded(void) const

SAnnotObjectsIndex TObjectIndex

map< SAnnotTypeSelector, SFeatIds > TFeatIdsMap

const TDescInfos & GetDescInfos(void) const

const TAssemblyInfos & GetAssemblyInfos(void) const

bool IsLoaded(void) const

static const char location[]

unsigned int TSeqPos

Type for sequence locations and lengths.

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_XOBJMGR_EXPORT

E_Choice

Choice variants.

const struct ncbi::grid::netcache::search::fields::SIZE size

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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