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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/tree__builder__tool_8cpp.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_alignment/tree_builder_tool.cpp File Reference

#include <ncbi_pch.hpp>
#include <objects/seqloc/Seq_id.hpp>
#include <gui/packages/pkg_alignment/tree_builder_tool.hpp>
#include <gui/packages/pkg_alignment/tree_builder_panel.hpp>
#include <gui/widgets/wx/message_box.hpp>
#include <gui/widgets/wx/wx_utils.hpp>
#include <serial/typeinfo.hpp>
#include <objmgr/object_manager.hpp>
#include <gui/objutils/label.hpp>
#include <algo/align/contig_assembly/contig_assembly.hpp>
#include <objmgr/scope.hpp>
#include <objmgr/util/sequence.hpp>
#include <algo/phy_tree/dist_methods.hpp>
#include <objects/seq/Seq_descr.hpp>
#include <objects/seq/Seqdesc.hpp>
#include <objects/seqfeat/Org_ref.hpp>
#include <objects/seqfeat/BioSource.hpp>
#include <objects/taxon1/taxon1.hpp>
#include <objects/biotree/DistanceMatrix.hpp>
#include <objtools/alnmgr/alnmix.hpp>
#include <objtools/alnmgr/alnvec.hpp>
#include <objtools/alnmgr/aln_explorer.hpp>
#include <objtools/alnmgr/aln_container.hpp>
#include <objtools/alnmgr/aln_converters.hpp>
#include <objtools/alnmgr/aln_builders.hpp>
#include <objtools/alnmgr/sparse_aln.hpp>

Include dependency graph for tree_builder_tool.cpp:

Go to the source code of this file.

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Classes class   CTreeBuilderJob   CTreeBuilderJob. More...
  Functions   USING_SCOPE (ncbi::objects)   static const string  sc_JukesCantor ("Jukes-Cantor (DNA)")   static const string  sc_Kimura ("Kimura (protein)")   static const string  sc_Poisson ("Poisson (protein)")   static const string  sc_FastMe ("Fast Minimum Evolution")   static const string  sc_Nj ("Neighbor Joining")   static const string  sc_SeqId ("Sequence ID")   static const string  sc_TaxName ("Taxonomic Name (if available)")   static const string  sc_SeqTitle ("Sequence Title (if available)")   static void  s_AddFeatureDescr (CBioTreeContainer &btc, int id, const string &name)   static void  s_AddFeature (CNode &node, int id, const string &value)   Function Documentation ◆ s_AddFeature() static void s_AddFeature ( CNode &  node, int  id, const string &  value  ) static

Definition at line 200 of file tree_builder_tool.cpp.

References CNode_Base::SetFeatures(), and rapidjson::value.

Referenced by CTreeBuilderJob::x_CreateProjectItems().

◆ s_AddFeatureDescr() static void s_AddFeatureDescr ( CBioTreeContainer &  btc, int  id, const string &  name  ) static

Definition at line 192 of file tree_builder_tool.cpp.

References CBioTreeContainer_Base::SetFdict().

Referenced by CTreeBuilderJob::x_CreateProjectItems().

◆ sc_FastMe() static const string sc_FastMe ( "Fast Minimum Evolution"  ) static

Referenced by CTreeBuilderJob::x_CreateProjectItems().

◆ sc_JukesCantor() static const string sc_JukesCantor ( "Jukes-Cantor (DNA)"  ) static

Referenced by CTreeBuilderJob::x_CreateProjectItems().

◆ sc_Kimura() static const string sc_Kimura ( "Kimura (protein)"  ) static

Referenced by CTreeBuilderJob::x_CreateProjectItems().

◆ sc_Nj() static const string sc_Nj ( "Neighbor Joining"  ) static

Referenced by CTreeBuilderJob::x_CreateProjectItems().

◆ sc_Poisson() static const string sc_Poisson ( "Poisson (protein)"  ) static

Referenced by CTreeBuilderJob::x_CreateProjectItems().

◆ sc_SeqId() static const string sc_SeqId ( "Sequence ID"  ) static ◆ sc_SeqTitle() static const string sc_SeqTitle ( "Sequence Title (if available)"  ) static

Referenced by CTreeBuilderJob::x_CreateProjectItems().

◆ sc_TaxName() static const string sc_TaxName ( "Taxonomic Name (if available)"  ) static

Referenced by CTreeBuilderJob::x_CreateProjectItems().

◆ USING_SCOPE() USING_SCOPE ( ncbi::objects  )

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