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NCBI C++ ToolKit: include/gui/widgets/seq_graphic/translation_glyph.hpp Source File

vector<TSeqRange>

;

& GetTranslation()

;

& GetOrfs()

;

& GetStartCodons()

;

& GetStopCodons()

;

NegativeStrand()

;

()

;

x_GetFrameLabel()

;

class CRgbaColor provides a simple abstraction for managing colors.

class CSeqGlyph defines an interface that wraps a rectilinear abstract object.

virtual bool IsClickable() const

Query if this glyph is clickable.

virtual void x_Draw() const =0

The default renderer for this layout object.

virtual void GetTooltip(const TModelPoint &, ITooltipFormatter &tt, string &t_title) const

Get the tooltip if available.

virtual bool NeedTooltip(const TModelPoint &, ITooltipFormatter &, string &) const

Check if need to show tooltip.

virtual void SetWidth(TModelUnit w)

virtual void SetLeft(TModelUnit l)

virtual void GetHTMLActiveAreas(TAreaVector *) const

Get html active areas.

virtual void x_UpdateBoundingBox()=0

Update the bounding box assuming children's sizes are fixed if any.

virtual TModelUnit GetLeft() const

vector< CHTMLActiveArea > TAreaVector

void SetOrfHighlightColor(const CRgbaColor &color)

CRgbaColor m_CommentColor

CRgbaColor & GetStopCodonColor()

CRgbaColor m_StopCodonColor

void SetSeqColor(const CRgbaColor &color)

void SetLabelBgColor(const CRgbaColor &color)

CGlTextureFont & GetSeqFont()

bool GetHighlightCodons() const

void SetStartCodonColor(const CRgbaColor &color)

CTranslationConfig inline methods.

void SetOrfSeqColor(const CRgbaColor &color)

CRgbaColor & GetLabelBgColor()

CGlTextureFont & GetStrandFont()

void SetStopCodonColor(const CRgbaColor &color)

CRgbaColor m_OrfHighlightColor

int GetOrfThreshold() const

CRgbaColor & GetCommentColor()

void SetHighlightCodons(bool f)

CRgbaColor m_StartCodonColor

void SetSeqFont(CGlTextureFont::EFontFace font, unsigned int font_size)

CGlTextureFont m_StrandFont

CRgbaColor & GetOrfSeqColor()

CRgbaColor m_LabelBgColor

void SetStrandFont(CGlTextureFont::EFontFace font, unsigned int font_size)

void SetCommentColor(const CRgbaColor &color)

void SetShowLabel(bool f)

void SetOrfThreshold(int val)

CRgbaColor & GetStartCodonColor()

CRgbaColor & GetOrfHighlightColor()

CRgbaColor & GetSeqColor()

TCodons & GetStartCodons()

void SetStop(TSeqPos stop)

vector< TSeqRange > TORFs

TCodons & GetStopCodons()

TORFs m_Orfs

Open reading frame list.

void SetStart(TSeqPos start)

TTransSeq m_TransSeq

translation sequence

EFrame m_Frame

which frame

CRef< CTranslationConfig > m_Config

configuration for rendering

void SetConfig(CTranslationConfig *config)

CTranslationGlyph inline methods.

TTransSeq & GetTranslation()

vector< TSeqPos > TCodons

bool NegativeStrand() const

unsigned int TSeqPos

Type for sequence locations and lengths.

void SetFontFace(EFontFace face, bool use_bitmap_overrides=true)

EFontFace

Set of pre-defined fonts for which we know we have valid font files.

void SetFontSize(unsigned int size)

Set/get font size in points.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIWIDGETS_SEQGRAPHIC_EXPORT

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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