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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/translation__glyph_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/seq_graphic/translation_glyph.cpp Source File

(p.

() >=

&& p.

() <=

) {

area.

=

;

p_areas->push_back(area);

strand_factor =

? -1 : 1;

orf_start = iter->GetFrom();

orf_stop = iter->GetTo();

( (

&& orf_start < vis_from) ||

(!

&& orf_start > vis_to) ) {

orf_len = (orf_stop - orf_start) * strand_factor + 1 + 2;

x_IntersectVisible<TModelUnit>(

(x1, x2), x1, x2);

x_IntersectVisible<TModelUnit>(

(x2, x1), x2, x1);

strandLabel[2] = {

,

};

strandLabel[0] =

?

:

;

strandLabel[0] =

?

:

;

gl.

(0.0f, 0.0f, 0.0f, 1.0f);

( (

&& *iter < vis_from) ||

(*iter < vis_from || *iter > vis_to) {

x_IntersectVisible<TModelUnit>(

(x1, x2), x1, x2);

x_IntersectVisible<TModelUnit>(

(x2, x1), x2, x1);

( (

&& *iter < vis_from) ||

(*iter < vis_from || *iter > vis_to) {

x_IntersectVisible<TModelUnit>(

(x1, x2), x1, x2);

x_IntersectVisible<TModelUnit>(

(x2, x1), x2, x1);

orf_start = iter->GetFrom();

orf_stop = iter->GetTo();

( (

&& orf_start < vis_from) ||

(!

&& orf_start > vis_to) ) {

pre_stop = orf_stop + strand_factor * 3;

orf_len = (orf_stop - orf_start) * strand_factor + 1 + 2;

.c_str(), left + end_len * 1.5, y,

);

(start > stop)

(start, stop);

start =

(start, vis_from);

stop =

(stop + 1, vis_to);

= (

< (

)shift ? 0 :

- shift) / 3;

stop_i = (stop_i < (

)shift ? 0 : stop_i - shift) / 3;

stop_i =

(stop_i,

- 1);

pos = start_x + (

? -3.0 : 3.0) *

+ 0.5;

((pos >= vis_from) && (pos <= vis_to))

(f1 > t1)

(f1, t1);

(f2 > t2)

(f2, t2);

[0] =

;

string m_Descr

description that can be used as label or tooltip

@ fNoHighlight

no highlighting on mouse over

@ fDrawBackground

highlight background for this area

@ fComment

render a label/comment on client side

@ fNoSelection

the object can't be selected

@ fTooltipEmbedded

tooltip embedded

string m_ID

area identifier

int m_Flags

area flags, will need to replace m_Type

bool m_PositiveStrand

the default is true

void TextOut(const CGlTextureFont *font, const char *text, TModelUnit x, TModelUnit y, bool center, bool adjust_flip=true) const

TModelUnit GetVisibleFrom() const

CRef< CSGSequenceDS > GetSeqDS() const

TSeqPos GetVisSeqTo() const

bool WillTransLettersFit() const

will translation letters fit.

void DrawQuad(const TModelRect &rc, bool border=false) const

TModelUnit ScreenToSeq(const TModelUnit &size) const

convert from screen pixels to sequence positions

bool IsFlippedStrand() const

TSeqPos GetVisSeqFrom() const

TSeqPos GetSequenceLength() const

void x_InitHTMLActiveArea(CHTMLActiveArea &area) const

initialize the basic information for a given active area.

CRenderingContext * m_Context

the rendering context

virtual void SetHeight(TModelUnit h)

virtual TModelUnit GetRight() const

virtual void SetWidth(TModelUnit w)

virtual void SetLeft(TModelUnit l)

virtual TModelUnit GetTop() const

virtual TModelUnit GetLeft() const

vector< CHTMLActiveArea > TAreaVector

virtual TModelUnit GetBottom() const

CRgbaColor & GetStopCodonColor()

CGlTextureFont & GetSeqFont()

bool GetHighlightCodons() const

CRgbaColor & GetLabelBgColor()

CGlTextureFont & GetStrandFont()

int GetOrfThreshold() const

CRgbaColor & GetOrfSeqColor()

CRgbaColor & GetStartCodonColor()

CRgbaColor & GetOrfHighlightColor()

CRgbaColor & GetSeqColor()

virtual void x_UpdateBoundingBox()

Update the bounding box assuming children's sizes are fixed if any.

virtual bool IsClickable() const

Query if this glyph is clickable.

virtual void GetTooltip(const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const

Get the tooltip if available.

virtual bool NeedTooltip(const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const

Check if need to show tooltip.

string x_GetFrameLabel() const

void x_DrawSequence(TSeqPos start, TSeqPos stop, TSeqPos vis_from, TSeqPos vis_to, TModelUnit center_y, bool negative) const

vector< TSeqRange > TORFs

bool x_Intersecting(TSeqPos f1, TSeqPos t1, TSeqPos f2, TSeqPos t2) const

CTranslationGlyph(EFrame frame)

virtual void x_Draw() const

The default renderer for this layout object.

TORFs m_Orfs

Open reading frame list.

TTransSeq m_TransSeq

translation sequence

EFrame m_Frame

which frame

CRef< CTranslationConfig > m_Config

configuration for rendering

virtual void GetHTMLActiveAreas(TAreaVector *p_areas) const

Get html active areas.

vector< TSeqPos > TCodons

bool NegativeStrand() const

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

void swap(NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair2)

IRender & GetGl()

convenience function for getting current render manager

virtual TModelUnit TextHeight(const CGlTextureFont *font) const =0

virtual TModelUnit TextWidth(const CGlTextureFont *font, const char *text) const =0

CRange< TModelUnit > TModelRange

void Color4f(GLfloat r, GLfloat g, GLfloat b, GLfloat a)

virtual void ColorC(const CRgbaColor &c)=0

Set current color (glColor{3,4}{f,d}{v,})

virtual void AddRow(const string &sContents="", unsigned colspan=2)=0

add a row with a cell, spanning across all columns

virtual void AddSectionRow(const string &sContents)=0

add a section row

virtual bool IsEmpty() const =0

Indicates if the tooltip is empty.

bool IntersectingWith(const TThisType &r) const

CRange< TSeqPos > TSeqRange

typedefs for sequence ranges

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static string UIntToString(unsigned int value, TNumToStringFlags flags=0, int base=10)

Convert UInt to string.

@ fWithCommas

Use commas as thousands separator.

static const char label[]

void SetFrom(TFrom value)

Assign a value to From data member.

void SetTo(TTo value)

Assign a value to To data member.

unsigned int

A callback function used to compare two keys in a database.

const GenericPointer< typename T::ValueType > T2 value

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