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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/track__container__track_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/seq_graphic/track_container_track.cpp Source File

106

, m_TrackInitFinished(

true

)

107

, m_SkipGenuineCheck(

false

)

110

x_RegisterIcon(

SIconInfo

(eIcon_Content,

"Content"

,

true

,

"track_content"

));

112

m_DS->SetJobListener(

this

);

143  if

(!p->GetShown()) {

149

vector<string> naAccs;

156  switch

(p->GetAction()) {

165

p->SetShown(

false

);

172  else if

(p->IsNA()) {

176

naAccessions.push_back(p->GetSource());

219  if

(track && track->

IsOn

()) {

222  const string

& t_name = p->GetName();

243  if

((*iter)->GetTrack()) {

245  dynamic_cast<CDataTrack

*

>

((*iter)->GetTrack());

264  if

(!p->GetShown())

continue

;

324  if

(track->

IsOn

()) {

336  const string

& disp_name,

338  const string

& filter,

339  const string

& sub_key)

345  string

track_name = name;

346  if

(track_name.empty()) {

347

track_name = track_key;

384  if

(track && !track->

GetTitle

().empty() ) {

399  if

(cont)

return

cont;

407  bool

was_on = track->

IsOn

();

415  if

(was_on) proxy->

SetShown

(

true

);

432

cont->SetIsBlast(

true

);

448  if

(title.empty()) title = track->

GetTitle

();

457  bool

adjust_order =

true

;

459  if

(original_track) {

471  if

( !filter_name.empty() ) {

491  _ASSERT

( !data_source.empty() );

493  if

(t_iter != tracks.

end

()) {

495

tracks.

erase

(t_iter);

505  if

( !tracks.

empty

() ) {

517  if

( !tracks.

empty

() ) {

529  if

( !filter_name.empty() ) {

536

sub_track->

Update

(

false

);

545  bool

graph_overlay = track_proxy && track_proxy->

GetKey

() ==

"graph_overlay"

;

549  if

(go_it == tracks.

end

())

551

go =

dynamic_cast<CGraphOverlay

*

>

(go_it->second.GetPointer());

557  if

(tracks.

size

() > 1)

558

tracks.

erase

(go_it);

568  else if

(tracks.

size

() > 1) {

585  if

( !filter_name.empty() ) {

590  dynamic_cast<CGraphOverlay

*

>

(

this

)->UpdateTrackParams(iter->first);

603

adjust_order =

false

;

606

tracks[track_proxy->

GetAnnots

().front()] = cont;

609

cont->Update(

false

);

620  if

( !filter_name.empty() ) {

665  while

(iter !=

m_TrackProxies

.end() && (*iter)->GetOrder() != order) {

670  if

((*iter)->GetTrack()) {

673

(*iter)->SetTrack(track);

695  while

(iter !=

m_TrackProxies

.end() && (*iter)->GetOrder() != order) {

713  while

(iter !=

m_TrackProxies

.end() && (*iter)->GetOrder() != order) {

718  if

( !(*iter)->IsTempTrack() ) {

738

full_proxy->

SetKey

(track_key);

740

annots.push_back(src_proxy->

GetSource

());

748

new_proxy->

SetName

(track_name);

760  while

(iter != p_track->

m_TrackProxies

.end() && order > (*iter)->GetOrder()) {

761

(*iter)->SetOrder(order);

773  while

(iter !=

m_TrackProxies

.end() && (*iter)->GetOrder() != order) {

777

(*iter)->SetDisplayName(new_name);

778

(*iter)->GetTrack()->SetTitle(new_name);

786  while

(iter !=

m_TrackProxies

.end() && (*iter)->GetOrder() != order) {

790  if

((*iter)->GetTrack()) {

791

(*iter)->GetTrack()->SaveProfile();

794

(*iter)->SetShown(

false

);

800

(*iter)->SetEmpty(

true

);

810  while

(iter !=

m_TrackProxies

.end() && (*iter)->GetOrder() != order) {

819

(*iter)->SetShown(

false

);

829

CLayoutGroup::TObjectList::iterator iter =

SetChildren

().begin();

830

CLayoutGroup::TObjectList::iterator p_iter = iter;

836  if

(iter ==

SetChildren

().end() || iter == p_iter)

return

;

842

(*proxy_iter)->GetOrder() != order) {

849

(*pre_proxy_iter)->GetOrder() != pre_order) {

857

(*pre_proxy_iter)->SetOrder(order);

858  if

((*pre_proxy_iter)->GetTrack())

859

(*pre_proxy_iter)->GetTrack()->SetOrder(order);

861

(*proxy_iter)->SetOrder(pre_order);

862  if

((*proxy_iter)->GetTrack())

863

(*proxy_iter)->GetTrack()->SetOrder(pre_order);

874

CLayoutGroup::TObjectList::reverse_iterator iter =

SetChildren

().rbegin();

875

CLayoutGroup::TObjectList::reverse_iterator n_iter = iter;

881  if

(iter ==

SetChildren

().rend() || iter == n_iter)

return

;

885

TTrackProxies::reverse_iterator proxy_iter =

m_TrackProxies

.rbegin();

887

(*proxy_iter)->GetOrder() != order) {

892

TTrackProxies::reverse_iterator n_proxy_iter =

m_TrackProxies

.rbegin();

894

(*n_proxy_iter)->GetOrder() != n_order) {

902

(*n_proxy_iter)->SetOrder(order);

903  if

((*n_proxy_iter)->GetTrack())

904

(*n_proxy_iter)->GetTrack()->SetOrder(order);

905

(*proxy_iter)->SetOrder(n_order);

906  if

((*proxy_iter)->GetTrack())

907

(*proxy_iter)->GetTrack()->SetOrder(n_order);

918

TTrackProxies::reverse_iterator proxy_iter =

m_TrackProxies

.rbegin();

920

(*proxy_iter)->GetOrder() != order) {

924

TTrackProxies::reverse_iterator next_track(proxy_iter);

927

(*proxy_iter)->SetOrder((*next_track)->GetOrder());

928  if

((*proxy_iter)->GetTrack())

929

(*proxy_iter)->GetTrack()->SetOrder((*next_track)->GetOrder());

930

(*next_track)->SetOrder(order);

931  if

((*next_track)->GetTrack())

932

(*next_track)->GetTrack()->SetOrder(order);

933

order = (*proxy_iter)->GetOrder();

948

(*proxy_iter)->GetOrder() != order) {

952

TTrackProxies::iterator next_track(proxy_iter);

955

(*proxy_iter)->SetOrder((*next_track)->GetOrder());

956  if

((*proxy_iter)->GetTrack())

957

(*proxy_iter)->GetTrack()->SetOrder((*next_track)->GetOrder());

959

(*next_track)->SetOrder(order);

960  if

((*next_track)->GetTrack())

961

(*next_track)->GetTrack()->SetOrder(order);

963

order = (*proxy_iter)->GetOrder();

978

(*proxy_from)->GetOrder() != from) {

985

(*proxy_to)->GetOrder() != to) {

989  int

new_order = (*proxy_to)->GetOrder() + 1;

990

(*proxy_to)->SetOrder(new_order);

991  if

(!(*proxy_to)->TrackNotSet()) {

992

(*proxy_to)->GetTrack()->SetOrder(new_order);

996

(*proxy_from)->SetOrder(to);

997  if

(!(*proxy_from)->TrackNotSet()) {

998

(*proxy_from)->GetTrack()->SetOrder(to);

1012

has_any = ((*iter)->GetTrack() !=

NULL

);

1024  int

off = (

int

)(seq_len * 0.0001);

1025  TSeqRange

total_range(off, seq_len - off);

1029

(*iter)->IsEmpty() ||

1030

((*iter)->GetTrack() ==

NULL

&&

1031  dynamic_cast<const CTrackProxy

*

>

(iter->GetPointer()) &&

1042  while

(iter !=

m_TrackProxies

.end() && (*iter)->GetOrder() != order) {

1049

(*iter)->SetShown(track->

IsOn

());

1067  size_t

length = name.length(), post_fix = 0;

1069  const string

&

n

= p->GetName();

1070  if

(

n

.length() <= length ||

n

.substr(0, length) != name)

1074  if

(errno == 0 &&

tmp

>= post_fix)

1087  if

(track && track->

GetTitle

() == name) {

1134  if

(shown != proxy->

GetShown

()) {

1143

c_track->

ShowAll

(shown, recursive);

1148  if

(t_proxy && shown != t_proxy->

GetShown

()) {

1175  int

off =

min

((

int

)(seq_len * 0.0001), 100);

1176  TSeqRange

total_range(off, seq_len - off);

1184  if

(full_proxy && full_proxy->

GetKey

() ==

1198  if

(c_track->

IsOn

()) {

1207

}

else if

(track ==

NULL

&& full_proxy &&

1223  for

(

const auto

&

t

: src_proxies) {

1227  if

(

t

->IsEmpty() ||

1228

(!

dynamic_cast<const CTrackProxy

*

>

(

t

.GetPointer()) &&

1229

!

t

->GetTrack() && !

t

->IsNA())) {

1232

dst_proxies.push_back(

t

);

1237  for

(

const auto

&

t

: src_proxies) {

1241  if

(

t

->IsEmpty() ||

1242

(!

dynamic_cast<const CTrackProxy

*

>

(

t

.GetPointer()) &&

1243

!

t

->GetTrack() && !

t

->IsNA())) {

1247  if

(

t

->GetShown())

1248

visible.push_back(

t

);

1250

hidden.push_back(

t

);

1254  for

(

const auto

&

t

: visible) {

1257

dst_proxies.push_back(

t

);

1261  for

(

const auto

&

t

: hidden) {

1264

dst_proxies.push_back(

t

);

1276

vector<string> naAccessions;

1278  for

(

auto

&

t

: menuTracks) {

1279  if

(!

t

->GetTrack()) {

1282  t

->SetShown(

true

);

1285  else if

(

t

->IsNA()) {

1286  t

->SetShown(

true

);

1287

naAccessions.push_back(

t

->GetSource());

1290  else if

(!

t

->GetShown()) {

1295  if

(!naAccessions.empty()) {

1306  for

(

auto

&

t

: menuTracks) {

1307  if

(!

t

->GetTrack())

continue

;

1308  if

(

t

->GetShown())

1318

vector<string> naAccessions;

1320  for

(

auto

&

t

: menuTracks) {

1321  if

(!

t

->GetTrack() &&

t

->IsNA()) {

1322  t

->SetShown(

true

);

1323

naAccessions.push_back(

t

->GetSource());

1330  if

(!naAccessions.empty()) {

1345  auto

it = menuTracks.begin();

1346  while

(it != menuTracks.end() && index-- != 0)

1349  if

(it == menuTracks.end())

1374  if

(proxy->

GetOrder

() == order) {

1385  if

(proxy->

IsNA

()) {

1407  if

((*iter)->GetTrack() !=

NULL

&& (*iter)->GetTrack()->IsOn()) {

1444  LOG_POST

(

Error

<<

"CTrackContainer::x_OnJobCompleted() notification \ 1445  for job does not contain results."

);

1453  if

( !tracks.

empty

() ) {

1457

c_track->SetSubtrackProxies(t_proxy->

GetChildren

());

1470  bool

need_update =

false

;

1471  if

( !tracks.

empty

() ) {

1472

need_update =

true

;

1474  SetMsg

(

", Initializing subtracks..., Finish initializing " 1489  for

(

const auto

& proxy : menuTracks) {

1491  string

item_name = proxy->GetDisplayName();

1492  if

(item_name.empty()) {

1493

item_name = proxy->GetName();

1495  string

help_text = item_name;

1496  if

(proxy->GetTrack()) {

1497  if

(proxy->GetShown() && !proxy->GetTrack()->GetFullTitle().empty() ) {

1498

help_text = proxy->GetTrack()->GetFullTitle();

1500

item_name = help_text;

1503

item_name +=

"..."

;

1509  if

(cont->

IsOn

()) {

1510

item_name +=

" (no data found so far)"

;

1512

item_name +=

" (potential)"

;

1515

}

else if

(proxy->GetShown()) {

1516

item_name +=

" (no data found so far)"

;

1518

item_name +=

" (potential)"

;

1521

wxMenuItem* item = 0;

1524

item = menu.AppendCheckItem(

1526  if

(proxy->GetShown()) {

1541  if

(proxy->GetTrack() && !proxy->GetTrack()->IsCollapsible() ) {

1542

item->Enable(

false

);

1547

menu.Append(

kBaseID

- 4,

wxT

(

"More..."

));

1554  bool

all_on =

true

;

1555  bool

all_off =

true

;

1558  if

((*iter)->GetShown()) {

1566

wxMenuItem* item = menu.Append(

kBaseID

- 3,

wxT

(

"Select all"

));

1567  if

(all_on) item->Enable(

false

);

1568

item = menu.Append(

kBaseID

- 2,

wxT

(

"Deselect all"

));

1569  if

(all_off) item->Enable(

false

);

1570

menu.Append(

kBaseID

- 1,

wxT

(

"Revert selections"

));

1571

menu.AppendSeparator();

1641

params.

m_Annots

.assign(accessions.begin(), accessions.end());

1646

factory,

this

, t_proxy, params);

1676

factory,

this

, t_proxy, params);

1681  SetMsg

(

", Initializing subtracks..."

);

1697  if

(t_proxy)

x_ReinitNATrack

(t_proxy, copyAnnots, makeContainersVisible);

1704  if

(

key

==

"sequence_track"

)

1722  if

(knownAnnots.

empty

())

1727  for

(

auto

it = annots.

begin

(); it != annots.

end

();) {

1728  auto

it2 = knownAnnots.

find

(it->first);

1729  if

(it2 != knownAnnots.

end

()) {

1731

it = annots.

erase

(it);

1738

vector<string> load;

1741  auto

it = known.

find

(p->GetSource());

1742  if

(it != known.

end

()) {

1743  if

(!p->GetTrack()) {

1744

p->SetNAdata(*it->second);

1747

load.push_back(it->first);

1753  for

(

auto

&

i

: known) {

1754  string

name_modified(

i

.first);

1761

load.push_back(

i

.first);

1766  if

(!load.empty()) {

1768  if

(makeContainersVisible)

1784  if

(p->GetTrack() == child) {

1798  if

(p->GetTrack() || p->IsNA()) ++total;

1803  msg

+=

" error, track is broken"

;

1833  bool

was_on = track->

IsOn

();

1871  bool

{

return

t1->

GetName

() < t2->GetName(); };

1873

src_copy.sort(NameComp);

1874  if

(!dst_proxies.empty())

1875

dst_proxies.sort(NameComp);

1879  bool

partial = (level == -2);

1881

time_t timeStamp = time(

NULL

);

1883  for

(

auto

sit = src_copy.begin(), dit = dst_proxies.begin(); sit != src_copy.end(); ++sit) {

1884  if

(!(*sit)->IsRealized() || !(*sit)->GetTrack())

continue

;

1894  while

(dit != dst_proxies.end() && (*dit)->GetName() < (*sit)->GetName())

1897  if

(dit != dst_proxies.end() && (*dit)->GetName() == (*sit)->GetName()) {

1898  if

((*sit)->IsTempTrack() && (*sit)->IsEmpty()) {

1899

dit = dst_proxies.erase(dit);

1903

(*dit)->

SetOrder

((*sit)->GetOrder());

1904

(*dit)->SetShown((*sit)->GetShown());

1905

(*dit)->SetExpanded((*sit)->GetExpanded());

1906

(*dit)->SetTimeStamp(timeStamp);

1907

(*dit)->SetTrackProfile((*sit)->GetTrackProfile());

1908

(*dit)->SetSource((*sit)->GetSource());

1909

(*dit)->SetFilter((*sit)->GetFilter());

1910

(*dit)->SetSortBy((*sit)->GetSortBy());

1911

(*dit)->SetId((*sit)->GetId());

1912

(*dit)->SetDisplayName((*sit)->GetDisplayName());

1923  else if

(dp && sp) {

1924  string

data_source =

1932  else if

(!(*sit)->IsEmpty()) {

1933

dit = dst_proxies.insert(dit, (*sit)->Clone());

1934

(*dit)->SetTimeStamp(timeStamp);

1952  if

(!track)

continue

;

1954  if

(c_track && !c_track->

IsOverlay

()) {

1956

(base_name.empty() ?

""

: base_name +

"---"

) + p->GetName(),

indent

);

1959

p->SetOrder(order++);

1960  if

(p->IsTempTrack()) {

1961

p->SetName(base_name +

"---"

+ p->GetName());

1964

dst_proxies.push_back(p);

1965  if

(p->GetShown()) {

1967

featurePanel->

Add

(track);

CAppJobNotification Notification send by CAppJobEventTranslator.

CDataTrack - a abstract base class for layout tracks which need to deal with background data retrieva...

virtual bool AllJobsFinished() const

virtual void DeleteAllJobs()

void CreateTrack(const string &desc, const ILayoutTrackFactory *factory, CTrackContainer *parent, CTempTrackProxy *params, const ILayoutTrackFactory::SExtraParams &extra_param)

void SetDSContext(ISGDataSourceContext *ds_context)

virtual bool AllJobsFinished() const

void SetRenderingContext(CRenderingContext *r_cntx)

void Add(CSeqGlyph *obj)

Append a layout object to the end.

CLayoutGroup & SetGroup()

const CLayoutGroup::TObjectList & GetChildren() const

virtual void Update(bool layout_only)

Update content and layout including the bounding box.

const CLayoutGroup & GetGroup() const

CLayoutGroup::TObjectList & SetChildren()

CGraphOverlay container of the graph_tracks that are dispalyed in overlay mode.

void UpdateSource(CTempTrackProxy *self_proxy=0)

void UpdateTrackParams(const string &annot_name)

Close a track.

void UpdateBoundingBox()

update group's bounding box only.

bool Remove(CSeqGlyph *obj)

Remove a layout object.

virtual void GetHTMLActiveAreas(TAreaVector *p_areas) const

Get html active areas.

void UpdateLayout()

update group's bounding box only, and its parent layout.

int m_IndentLevel

track hierachy indentation level.

void SetShowTitle(bool flag)

void SetTitle(const string &label, const string &default_title=NcbiEmptyString)

virtual bool x_ShowTitle() const

Need to preserve title space and show the title.

@ eIcon_Content

icon id for setting content

@ eIcon_Settings

icon id for track settings

bool GetShowTitle() const

void SetIndent(int indent)

ILayoutTrackHost * m_LTHost

Top level host owning the tracks.

virtual void SetComments(const string &)

set comments.

CLayoutTrack * GetParentTrack()

string GetTitle() const

get the track title.

void CloseMe()

close this track.

void x_OnLayoutChanged()

update the layout.

void SetConfig(CRef< CSeqGraphicConfig > conf)

virtual void x_OnIconClicked(TIconID id)

Mouse left-click event handler on an icon.

void SetShow(bool shown)

set the flag only.

void LoadProfile(const string &profile_str)

set track profile and load settings.

void SetIsBlast(bool isBlast)

void SetParentTrack(CLayoutTrack *parent)

void SetMsg(const string &msg)

void Expand(bool expand)

Collapse or expand the track.

CRef< CSeqGraphicConfig > m_gConfig

global configuration.

virtual const CTrackTypeInfo & GetTypeInfo() const =0

int TIconID

use int as TIconID instead of EIconID.

virtual void SetHighlights(const string &)

virtual CHTMLActiveArea * InitHTMLActiveArea(TAreaVector *p_areas) const

Initialize the HTML active area for a track.

void SetHost(ILayoutTrackHost *host)

CRenderingContext offers the basic context and utility methods for rendering layout objects in featur...

CRef< CSGSequenceDS > GetSeqDS() const

const TSeqRange & GetVisSeqRange() const

static bool IsBackgroundJob()

virtual void ClearJobID(TJobID job_id)

virtual void DeleteAllJobs()

Remove waiting jobs from queue or cancel the unfinished jobs.

TSeqPos GetSequenceLength() const

void SetHighlightsColor(const CRgbaColor &hl_color)

CRenderingContext * m_Context

the rendering context

virtual void SetHeight(TModelUnit h)

virtual void Update(bool)

Update content and layout including the bounding box.

vector< CHTMLActiveArea > TAreaVector

const string & GetSizeLevel() const

void UpdateNA_ChildVisibility(CTempTrackProxy &child) const

void SetShown(bool shown)

const string & GetSubkey() const

void SetName(const string &name)

const string & GetCategory() const

const string & GetDisplayName() const

virtual CRef< CTempTrackProxy > Clone() const

virtual bool IsTempTrack() const

check if this is a temporary track.

const TSeqRange & GetVisitedRange() const

const string & GetSortBy() const

list< CRef< CTempTrackProxy > > TTrackProxies

bool GetShowTitle() const

void SetTrack(CLayoutTrack *track)

Associated any track already?.

void SetSource(const string &src)

void SetFilter(const string &filter)

CConstRef< CTempTrackProxy > GetChildTempTrack(const string &name) const

Get track params for child temporary track.

const string & GetKey() const

void SetNAdata(CAnnotMetaData &na)

const string & GetHighlightsColor() const

const string & GetHighlights() const

void SetTrackProfile(const string &profile)

const TAnnots & GetAnnots() const

void SetKey(const string &key)

const string & GetTrackProfile() const

const TTrackProxies & GetChildren() const

void SetOrder(int order)

CTempTrackProxy class implementation.

const string & GetStoredScale() const

const string & GetRemotePath() const

void SetAnnots(const TAnnots &annots)

const string & GetName() const

void SetDisplayName(const string &name)

const string & GetComments() const

const CLayoutTrack * GetTrack() const

const TSubTracks & GetSubTracks() const

const string & GetSource() const

CRef< CTempTrackProxy > AddTempTrack(const string &name, const string &title)

add a new template track params.

void SetVisitedRange(const TSeqRange &range)

const string & GetFilter() const

CTrackConfigManager a help class to manage layout track configuration.

const ILayoutTrackFactory * GetTrackFactory(const string &key) const

static void AdjustTrackOrder(CTempTrackProxy *t_proxy)

void x_OnMore(wxCommandEvent &)

CTrackContainer * m_Track

void x_OnSelectAll(wxCommandEvent &)

void x_OnToggleTrack(wxCommandEvent &event)

void x_OnTrackSettings(wxCommandEvent &event)

CTrackContainerEvtHandler(CTrackContainer *track)

void x_OnDeselectAll(wxCommandEvent &)

void x_OnRevertSelection(wxCommandEvent &)

void OnContextMenu(wxContextMenuEvent &anEvent)

virtual TTrackMap CreateTracks(SConstScopedObject &object, ISGDataSourceContext *ds_context, CRenderingContext *r_cntx, const SExtraParams &params=SExtraParams(), const TAnnotMetaDataList &src_annots=TAnnotMetaDataList()) const

create a layout track based on the input objects and extra parameters.

static const CTrackTypeInfo & GetTypeInfo()

virtual string GetExtensionIdentifier() const

returns the unique human-readable identifier for the extension the id should use lowercase letters se...

virtual string GetExtensionLabel() const

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

CTrackContainer - a track container in the form of layout track.

void SortChildTracksByOrder()

void ExpandAll(bool expand)

expand or collapse this track and its subtracks recursively.

void OnMenuTrackSettings(int index)

void SetSkipGenuineCheck(bool flag)

virtual void RenameChildTrack(int order, const string &new_name)

Rename a child track.

void LoadNATracks(CTempTrackProxy *t_proxy, const vector< string > &accessions)

void ToggleTracks(vector< string > &naAccessions)

void x_ShowTrack(CLayoutTrack *track, bool on)

void ShowAll(bool shown, bool recursive=true)

turn on/off all children tracks (recursively).

virtual bool NoSubtrackEver() const

Will have no subtrack for ever.

void RemoveEmptyTracks()

remove the empty tracks recursively from bottom to top.

virtual bool IsOverlay() const

virtual void x_OnJobCompleted(CAppJobNotification &notify)

bool AllTracksCreated() const

bool x_HasToggleTracks() const

virtual void GetHTMLActiveAreas(TAreaVector *p_areas) const

Get html active areas.

virtual const CTrackTypeInfo & GetTypeInfo() const

virtual void ResetSearch()

virtual void x_UpdateData()

update track content.

CTrackContainer(CRenderingContext *r_cntx, CFeaturePanelDS *ds=NULL)

void SaveTrackStates(int order)

Save track states to it proxy.

virtual bool HasSubtracks() const

Has any real subtracks.

void AddTrackProxy(CTempTrackProxy *proxy, bool upgateMsg=true)

Add a track proxy.

virtual void DeleteAllJobs()

bool IsTrackInitDone() const

CTrackContainer * GetChildContainerTrack(const string &name)

Get a child track container track.

CTrackProxy * AddNewTrack(const string &track_key, const CTrackProxy::TAnnots &annots, const string &disp_name, const string &name="", const string &filter="", const string &sub_key="")

Add a new empty track proxy.

virtual void OnToggleTrack(int order)

void SetAdaptive(bool flag)

CTrackConfigManager * GetConfigMgr()

int GetAnnotLevel() const

static CTrackTypeInfo m_TypeInfo

CLayoutTrack required track type info.

void SetAnnotLevel(int level)

void ClearTracks()

Remove all tracks.

virtual void x_OnIconClicked(TIconID id)

override method in CLayoutTrack to handle speical cases.

void x_MakeTopLevelTracks(CGlyphContainer *featurePanel, TTrackProxies &dst_proxies, int &order, const string &base_name, int indent)

Make all the tracks at different levels as top-level tracks.

virtual bool AllJobsFinished() const

virtual void MoveTrackToTop(int order)

move a track up by 1.

bool x_HasToBeShown() const

void x_UpdateMsg()

udpate message in track title bar.

virtual void RemoveTrack(int order, bool immediately=true)

completely remove a track from the hierachical tree.

void SyncSettings(TTrackProxies &dst_proxies, int level) const

synchronize and merge track settings.

void MoveTrack(int from, int to)

virtual CRef< CSGGenBankDS > GetDataSource()

Method for accessing the data source.

void AddTracks(CTempTrackProxy *t_proxy, TTrackMap &tracks)

add sub tracks after tracks get created.

CRef< CFeaturePanelDS > m_DS

void x_CreateTracksMenu(wxMenu &menu, TIconID id)

virtual bool x_ShowTitle() const

Need to preserve title space and show the title.

void x_AddSubtrack(CTrackContainer *parent, CLayoutTrack *track, CTempTrackProxy *proxy)

bool m_Adaptive

Adpative/Exact selector.

virtual void SetTrack(CLayoutTrack *track, int order, bool shown=true)

Replace the track by the given track order.

virtual void x_ReinitSubtracks()

reinitialize all subtracks if necessary.

void SetTrackInitDone(bool f)

CTempTrackProxy::TTrackProxies TTrackProxies

virtual void MoveTrackToBottom(int order)

move a track down by 1.

void x_ReinitNATrack(CTempTrackProxy *t_proxy, TAnnotMetaDataList &annots, bool makeContainersVisible)

void OnMenuToggleTrack(int index)

int m_AnnotLevel

Annotation selector depth.

TTrackProxies m_TrackProxies

all the tracks including on and off.

virtual void x_OnAllJobsFinished()

actions to take on all job finished.

virtual void CloneTrack(int order, const string &track_tile)

Duplicate an existing track.

string GetUniqueTrackName(const string &name) const

CRef< CTempTrackProxy > x_GetMenuTrack(int index)

void x_ReinitTrack(CTrackProxy *t_proxy)

reinitialize a given subtrack

virtual ~CTrackContainer()

virtual void MoveDown(int order)

move a track down by 1.

CTrackContainer * x_ConvertToContainer(CTempTrackProxy *proxy)

virtual void CloseTrack(int order)

Close a track.

virtual void MoveUp(int order)

move a track up by 1.

virtual void ReinitNASubtracks(TAnnotMetaDataList &, bool)

void SetSubtrackProxies(const TTrackProxies &proxies)

void InitNATracks(const TAnnotMetaDataList &annots, bool makeContainersVisible)

virtual bool x_Empty() const

wxEvtHandler * m_Handler

wx-related event handler.

bool GetSkipGenuineCheck() const

virtual void OnTrackSettings(int order)

CTrackProxy data structure contains information about the position of a track in its parent scope,...

void SetContShown(bool contShown)

bool GetContShown() const

CTrackTypeInfo - holds description of a layout track type.

const string & GetDescr() const

const string & GetId() const

virtual void CloneTrack(const CLayoutTrack *, CTempTrackProxy *) const

duplicate any track setting from a given track instance to a proxy.

static string ExtractFilterName(const string &source)

extract filter name from a source string.

static string ExtractAnnotName(const string &source)

extract anntation name from a source string.

static string MergeAnnotAndFilter(const string &annot, const string &filter)

create a new name based on annotation name and fitler string.

static void GetMatchedAnnots(const TAnnotMetaDataList &src_annots, const vector< string > &target_annots, const string &annot_type, const string &track_type, TAnnotNameTitleMap &out_annots)

Help function to find matched annotations.

virtual bool NeedBackgroundInit() const =0

Background track initialization.

virtual void LTH_ConfigureTracksDlg(const string &category)

virtual void LTH_PopupMenu(wxMenu *menu)=0

show track-specific context menu.

virtual void LTH_PushEventHandler(wxEvtHandler *handler)=0

virtual void LTH_PopEventHandler()=0

ISGDSManager is seqgraphic data source manage that serves as an data source context.

virtual CIRef< ISGDataSource > GetDS(const string &type, SConstScopedObject &object)=0

Get a seqgraphic data source instance of the specified type.

ITrackInitObserver: interface class work as an observer of a track that is responsible of intializing...

virtual void OnTrackInitFinished(const CLayoutTrack *sender)=0

container_type::iterator iterator

const_iterator begin() const

const_iterator end() const

iterator_bool insert(const value_type &val)

const_iterator find(const key_type &key) const

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

CRef< CObject > GetResult() const

returns non-null pointer only if Completed or Running and has temporary results available

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

TObjectType * GetPointerOrNull(void) THROWS_NONE

Get pointer value.

bool IntersectingWith(const TThisType &r) const

TThisType & CombineWith(const TThisType &r)

TThisType IntersectionWith(const TThisType &r) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string SizetToString(size_t value, TNumToStringFlags flags=0, int base=10)

Convert size_t to string.

static string & Replace(const string &src, const string &search, const string &replace, string &dst, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

static string JsonEncode(const CTempString str, EJsonEncode encoding=eJsonEnc_UTF8)

Encode a string for JSON.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

@ fConvErr_NoThrow

Do not throw an exception on error.

unsigned int

A callback function used to compare two keys in a database.

const struct ncbi::grid::netcache::search::fields::KEY key

EVT_MENU_RANGE(MID_SHOW_TITLES, MID_HIDE_TITLES, ViewerWindowBase::OnTitleView) EVT_MENU_RANGE(MID_ENABLE_EDIT

ViewerWindowBase::OnEditMenu ViewerWindowBase::OnJustification EVT_MENU(MID_SHOW_GEOM_VLTNS, ViewerWindowBase::OnShowGeomVltns) EVT_MENU(MID_FIND_PATTERN

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

A help struct for storing information about a icon.

static bool s_CompareCRefs(const CRef< CTempTrackProxy > &t1, const CRef< CTempTrackProxy > &t2)

static const size_t kMaxMenuTracks

static bool s_GetMenuTracks(CTempTrackProxy::TTrackProxies &dst_proxies, const CTempTrackProxy::TTrackProxies &src_proxies)

static void s_UpdateTitle(CTempTrackProxy *proxy, CLayoutTrack *track)

static const size_t kMaxNameLen

static bool s_TrackByOrder(const CRef< CSeqGlyph > &t1, const CRef< CSeqGlyph > &t2)

help functor for sorting CSeqGlyphs (known as CLayoutTrack) by order.

static const int kBaseID_Settings

static string s_GetBestTrackTitle(const CTempTrackProxy *proxy, const CLayoutTrack *track)

wxString ToWxString(const string &s)


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