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NCBI C++ ToolKit: src/gui/widgets/seq_graphic/track_config_manager.cpp Source File

f_iter->second;

ttypes.push_back(it->first);

configs = factory->

(

, settings,

);

track->SetKey(

);

(

->IsSetSubkey()) {

track->SetSubkey(

->GetSubkey());

(

->IsSetHelp()) {

track->SetHelp(

->GetHelp());

(

->IsSetLegend_text()) {

track->SetLegend_text(

->GetLegend_text());

(

->IsSetChoice_list()) {

->SetType(

);

->SetConditions().push_back(cond);

values.push_back(

);

optnum =

(bundle_options.size());

options.push_back(optnum);

bundle_options.push_back(

);

(

->IsSetCheck_boxes()) {

->SetType(

);

->SetConditions().push_back(cond);

optnum =

(bundle_options.size());

options.push_back(optnum);

bundle_options.push_back(

);

(

->IsSetText_boxes()) {

->SetType(

);

->SetConditions().push_back(cond);

optnum =

(bundle_options.size());

options.push_back(optnum);

bundle_options.push_back(

);

(

->IsSetRange_controls()) {

(

& rc :

->GetRange_controls()) {

->SetType(

);

(rc->CanGetName())

name = rc->GetName();

(rc->IsSetDisplay_name())

->SetLabel(rc->GetDisplay_name());

->SetHelp(rc->GetHelp());

(rc->IsSetConditions()) {

(

& c : rc->GetConditions()) {

->SetConditions().push_back(cond);

(rc->IsSetOptional()) {

->SetOptional(rc->GetOptional());

optnum =

(bundle_options.size());

options.push_back(optnum);

bundle_options.push_back(

);

(

->IsSetHidden_settings()) {

->SetType(

);

optnum =

(bundle_options.size());

options.push_back(optnum);

bundle_options.push_back(

);

bundle_tracks.push_back(track);

(list<string>, it, keys) {

(level == -1) level = 0;

& track_name)

(find(annots.begin(), annots.end(), track_name) != annots.end() ||

(!annots.empty() && annots.front() ==

)) {

(

!= t_proxy)

pair<string, bool> TAnnotStatus;

list<TAnnotStatus> all_tracks;

all_tracks.push_back(TAnnotStatus(name,

));

( !all_tracks.empty() ) {

list<TAnnotStatus>::iterator t_iter = all_tracks.begin();

(t_iter == all_tracks.end()) {

vector<int> old_orders;

& name = (*iter)->GetName();

(tt_iter->first == name) {

old_orders.push_back((*iter)->GetOrder());

tt_iter->second =

;

t_iter = all_tracks.begin();

(t_iter != all_tracks.end()) {

( !t_iter->second ) {

t_iter = all_tracks.erase(t_iter);

(all_tracks.size() > old_orders.size()) {

all_tracks.pop_front();

t_iter = all_tracks.begin();

(t_iter != all_tracks.end() &&

t_iter->first != (*iter)->GetName()) {

(t_iter != all_tracks.end()) {

(*iter)->SetOrder(old_orders[idx]);

vector<string> key_values;

(

& opt : key_values) {

options2hide.

(opt.substr(1));

options2show.

(opt.substr(1));

options2show.

(opt);

}

(exception& e) {

(s_iter == iter->end())

;

s_iter = track.

();

(s_iter != track.

()) {

& k_str = s_iter->first;

settings.

= s_iter->second;

settings.

= s_iter->second;

settings.

= s_iter->second;

vector<string> tokens;

(tokens.size() > 0) {

(tokens.size() > 1) {

settings.

= s_iter->second;

settings.

= s_iter->second;

settings.

= s_iter->second;

settings.

[

] = s_iter->second;

settings.

= s_iter->second;

settings.

= s_iter->second;

settings.

= s_iter->second;

settings.

[k_str] = s_iter->second;

.push_back(settings);

profile_str +=

;

profile_str += iter->first +

+ iter->second;

exact_annot_match =

)

( !t_track )

;

(t_track->

() != src_track.

)

(!src_track.

.empty()) {

(!src_track.

.empty()) {

( !src_track.

.empty() ) {

( !exact_annot_match && src_track.

.empty()) {

(annots1.begin(), annots1.end());

(annots2.begin(), annots2.end());

std::equal(annots1.begin(), annots1.end(), annots2.begin());

CTrackConfigManager::TTrackProxies::iterator

CTrackConfigManager::TTrackProxies::iterator iter = track_list.begin();

(; iter != track_list.end(); ++iter) {

order,

update_annots =

)

(!s.

.empty()) {

(track.

().empty()) {

(!s.

.empty()) {

(update_annots && !s.

.empty()) {

(!s.

.empty()) {

(!s.

.empty()) {

(

& subtrack_id,

& track_id,

& track_attr)

pos = subtrack_id.find_last_of(

);

(pos != string::npos) {

track_id = subtrack_id.substr(0, pos);

track_attr = subtrack_id.substr(pos + 1);

track_id = subtrack_id;

(!track->

().empty()) {

(!track->

().empty()) {

tr_id = track_id;

pos = track_id.find_last_of(

);

(pos != string::npos)

tr_id = track_id.substr(0, pos);

it = m_IdIndex.find(tr_id);

(it != m_IdIndex.end())

(it->second);

it = m_AnnotIndex.find(tr_id);

(it != m_AnnotIndex.end())

(it->second);

it = m_UidIndex.find(tr_id);

(it != m_UidIndex.end())

(it->second);

vector<CTrackProxy*> overlays;

(track->

() ==

) {

overlays.push_back(track);

(overlays.empty())

(*parent_it)->GetChildren().clear();

track_id, track_attr;

subtrack_proxy->

(track_attr !=

);

subtrack_proxy->

(*subtr_it);

(subtrack_proxy->

().empty()) {

(*parent_it)->GetChildren().push_back(subtrack_proxy);

(*iter)->SetShown(

);

last_id = t_settings.back()->GetOrder();

(t_iter != t_settings.end()) {

(iter->m_Order >= 0) {

order = iter->m_Order;

(iter->m_Shown) {

vector<int> order_list;

order_list.push_back(track->

());

(order_list.size() == show_list.size());

(*iter)->SetOrder(order_list[idx++]);

last_id = t_settings.back()->GetOrder();

(t_iter != t_settings.end()) {

(iter->m_Order >= 0) {

order = iter->m_Order;

was_on = track->GetShown();

( !iter->m_Annots.empty() ) {

track->SetAnnots(iter->m_Annots);

}

(!track->GetAnnots().empty() ) {

(iter->m_Annots.begin(), iter->m_Annots.end(), back_inserter(annots));

track->SetAnnots(annots);

track->SetAnnots(iter->m_Annots);

track->SetAnnots(iter->m_Annots);

max_order = INT_MAX;

(*iter)->SetOrder(max_order);

order = order_offset;

(order == max_order)

(t_iter != t_settings.end()) {

TTrackProxies::iterator t_iter = t_settings.begin();

(t_iter != t_settings.end() && (*t_iter)->GetOrder() < max_order) {

t_settings.erase(t_iter, t_settings.end());

& annot_name = temp_proxy.

();

(meta_data == 0) {

(iter != md_list.

()) {

meta_data = iter->second;

}

(meta_data && !meta_data->

.empty()) {

display_name = meta_data->

;

(annot_name.find(display_name) != string::npos) {

display_name = annot_name;

}

(display_name.find(annot_name) == string::npos) {

display_name.clear();

(!display_name.empty())

display_name +=

;

display_name += annot_name;

display_name =

+ display_name;

display_name =

+ display_name;

(

&annot : temp_proxy.

()) {

host = url.

();

(host ==

)

display_name =

+ display_name;

(

.IsSetChoice_list()) {

& choice_name = choice->GetName();

(choice->IsSetOptional() && choice->GetOptional()) {

if (options2show.count(choice_name) == 0)

(options2hide.count(choice_name) > 0)

string item_name = choice_name;

item_name += choice_item->GetName();

if (choice_item->IsSetOptional() && choice_item->GetOptional()) {

if (options2show.count(item_name) == 0)

options2hide.count(item_name) > 0;

choice->GetValues().

();

(

.IsSetCheck_boxes()) {

& cb_name = cb->GetName();

(cb->IsSetOptional() && cb->GetOptional()) {

if (options2show.count(cb_name) == 0)

options2hide.count(cb_name) > 0;

& title_base)

(p_iter != settings.

()) {

profile = p_iter->second;

}

( !settings.

() || profile.empty()) {

profile =

;

& annot_name = temp_proxy->

();

(iter != md_list.

()) {

meta_data = iter->second;

conf_factory->

(profile, settings, temp_proxy);

( !configs->

().empty() ) {

vector<string> TCommentPos;

TCommentPos cmt_pos;

TCommentPos::const_iterator iter = cmt_pos.begin();

(iter != cmt_pos.end()) {

&

= *iter;

(++iter != cmt_pos.end()) {

->SetComments().push_back(

vector<string> THighlights;

(THighlights, h_iter, hls) {

->SetHighlights().push_back(hl);

->SetShow_title(

);

(!temp_proxy->

().empty()) {

(!temp_proxy->

().empty()) {

(meta_data && !meta_data->

.empty() && temp_proxy->

().empty()) {

display_name = title_base;

->SetDisplay_name(display_name);

(cat_name.empty()) {

(meta_data && !meta_data->

.empty()) {

cat_name =

;

(

.find(

) != string::npos ||

.find(

) != string::npos) {

cat_name =

;

cat_name =

;

sub_cat_name = title_base;

cat_name =

;

cat_name =

;

cat_name =

;

->SetCategory(*cat);

( !sub_cat && !sub_cat_name.empty() ) {

->SetSubcategory(*sub_cat);

( !temp_proxy->

().empty() ) {

( !temp_proxy->

().empty() ) {

( !temp_proxy->

().empty() ) {

(proxy && !proxy->

().empty() ) {

(proxy && !proxy->

().empty() ) {

->SetAnnots().push_back(annot_name);

(!temp_proxy->

().empty())

(!temp_proxy->

().empty()) {

vector< CIRef<ILayoutTrackFactory> > TTrackFactoryVec;

TTrackFactoryVec factories;

(TTrackFactoryVec, iter, factories) {

[(*iter)->GetThisTypeInfo().GetId()] = *iter;

(

& p : proxies) {

(p->GetKey() == featKey)

subkeys.

(p->GetSubkey());

User-defined methods of the data storage class.

User-defined methods of the data storage class.

CAggregateFeatureTrackFactory.

static const CTrackTypeInfo & GetTypeInfo()

CAllOtherFeaturesTrackFactory.

CRef< objects::CCategory > GetCategory(const string &cat_name)

CRef< objects::CCategory > GetSubcategory(const string &cat_name, const string &sub_cat)

CDisplayOptionsBundle –.

CEpigenomicsDSType - Epigenomics data source type.

CEpigenomicsTrackFactory.

CExtensionDeclaration - static declaration helper.

CFeatListItem - basic configuration data for one "feature" type.

CConfigurableItems - a static list of items that can be configured.

string GetStoragekey(int type, int subtype) const

Get the key used to store this type of feature.

static const CTrackTypeInfo & GetTypeInfo()

int GetFeatSubtype() const

static const CTrackTypeInfo & GetTypeInfo()

static const CTrackTypeInfo & GetTypeInfo()

virtual const CTrackTypeInfo & GetTypeInfo() const =0

CSFTransDSType - Six-frames translation data source type.

static void ParseProfileString(const string &profile_str, TKeyValuePairs &settings)

static const CFeatList * GetFeatList()

CRef< CCategoryConfig > GetCategoryConfig()

CSeqTableGraphTrackFactory.

CSixFramesTransTrackFactory.

const string & GetSeqDataKey() const

void SetHubId(const string &hub_id)

void SetShown(bool shown)

void SetRemoteId(const string &remote_id)

void SetRemoteData(const string &remote_data)

const string & GetSubkey() const

const string & GetHelp() const

void SetName(const string &name)

void SetCategory(const string &cat)

const string & GetUId() const

const string & GetCategory() const

const string & GetDisplayName() const

const string & GetBatch() const

const string & GetRemoteId() const

const string & GetSortBy() const

bool GetShowTitle() const

void SetTrack(CLayoutTrack *track)

Associated any track already?.

void SetSource(const string &src)

void SetFilter(const string &filter)

const string & GetBigDataIndex() const

void SetHighlights(const string &hl_str)

void SetId(const string &id)

const string & GetKey() const

void SetHelp(const string &help)

void SetComments(const string &comment_str)

void SetUId(const string &uid)

vector< string > TSubTracks

const string & GetHighlightsColor() const

void SetHighlightsColor(const string &hl_str)

const string & GetHighlights() const

void SetTrackProfile(const string &profile)

const TAnnots & GetAnnots() const

void SetKey(const string &key)

static const string kAnonTrackName

CTempTrackProxy class implementation.

void SetSettingGroup(const string &name)

const set< string > & GetOptions2Hide() const

void SetSubcategory(const string &scat)

const string & GetExtraInfo() const

void SetBigDataIndex(const string &big_data_index)

void SetBatch(const string &batch)

const string & GetId() const

const string & GetTrackProfile() const

void SetSortBy(const string &sort_by)

void SetIsPrivate(bool flag)

void SetOptions2Show(const set< string > &options2show)

bool GetIsPrivate() const

void SetOrder(int order)

CTempTrackProxy class implementation.

TSubTracks & SetSubTracks()

void SetRemotePath(const string &remote_path)

void SetSeqDataKey(const string &seq_data_key)

const string & GetStoredScale() const

const set< string > & GetOptions2Show() const

void SetAnnots(const TAnnots &annots)

const string & GetName() const

void SetDisplayName(const string &name)

const string & GetHubId() const

void SetOptions2Hide(const set< string > &options2hide)

const string & GetComments() const

const CLayoutTrack * GetTrack() const

const TSubTracks & GetSubTracks() const

const string & GetSource() const

const string & GetSettingGroup() const

void SetUseGroupDefault(bool flag)

void SetShowTitle(bool flag)

void SetExtraInfo(const string &sExtraInfo)

const string & GetSubcategory() const

void SetErrorStatus(const TTrackErrorStatus &ErrorStatus)

void SetStoredScale(const string &stored_scale)

const string & GetFilter() const

void SetSubkey(const string &sub_key)

const string & GetRemoteData() const

helper class to faciliatet subtrack processing build pseudo compound track index and provides find me...

CTrackIndex(TTrackProxies &t_settings)

CRef< CTrackProxy > FindTrackById(const string &track_id)

CTempTrackProxy::TTrackProxies TTrackProxies

static void SetTrackConfig(TTrackProxies &t_settings, const TTrackSettingsSet &in_settings, int order_offset=0)

Reset the track configuration with input settings.

list< TTrackSettings > TTrackSettingsSet

const ILayoutTrackFactory * GetTrackFactory(const string &key) const

const TAnnotMetaDataList & GetKnownAnnots(int level) const

Get known annotation based on level number.

void CreateDisplayName(const CAnnotMetaData *meta_data, const CTempTrackProxy &temp_proxy, string &display_name) const

void AlignTrackConfig(TTrackProxies &t_settings, const TTrackSettingsSet &in_settings)

list< string > GetTrackTypes() const

static bool ValidFeatureTrack(const objects::CFeatListItem &item)

void MergeTrackConfig(TTrackProxies &t_settings, const TTrackSettingsSet &settings_set, EAnnotMerge merge)

Merge with the existing track configuration.

static void GetUsedFeatureKeys(set< string > &subkeys, const TTrackProxies &proxies)

void x_InitTrackManager()

CRef< objects::CTrackConfig > CreateTrackConfig(CTempTrackProxy *temp_proxy, CSeqGraphicConfig &g_config, const string &title_base) const

Create configuration for a give track proxy.

TKnownAnnotMap m_KnownAnnots

Complete list of known annotations with meta-data.

static void AdjustTrackOrder(CTempTrackProxy *t_proxy)

bool OnShownList(const CTempTrackProxy *p_proxy, const CTempTrackProxy *t_proxy, const string &track_name) const

ILayoutTrackFactory::TAnnotMetaDataList TAnnotMetaDataList

CConstRef< objects::CDisplayOptionsBundle > GetTrackDisplayOptions(const list< string > &keys) const

static void RegisterSGTracks()

void x_AppendKeyDisplayOptions(const string &key, objects::CDisplayOptionsBundle &bundle) const

static CRef< objects::CCategory > CreateCategory(const string &name, const string &disp_name, const string &help, int order)

static CRef< objects::CComment > CreateComment(const string &label, const string &pos_str)

CTrackContainer - a track container in the form of layout track.

void SortChildTracksByOrder()

const TTrackProxies & GetSubtrackProxies() const

CTrackContainer inline methods.

CTrackProxy data structure contains information about the position of a track in its parent scope,...

void SetDataKey(const string &key)

void SetOriginalKey(const string &key)

const string & GetDB() const

const string & GetDataKey() const

void SetDB(const string &db)

const string & GetDescr() const

const string & GetId() const

virtual const CTrackTypeInfo & GetThisTypeInfo() const =0

ITrackConfigurable interface for tracks that are configurable.

virtual CRef< objects::CTrackConfigSet > GetSettings(const string &profile, const TKeyValuePairs &settings, const CTempTrackProxy *track_proxy) const =0

container_type::const_iterator const_iterator

const_iterator begin() const

const_iterator end() const

const_iterator find(const key_type &key) const

iterator_bool insert(const value_type &val)

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

void Error(CExceptionArgs_Base &args)

static bool IsNAA(const string &annot, bool isStrict=false)

check if a given annotation is a named annotation accession[.version][number] when isSctrict == false...

string m_xClass

annotation category

static const string & GetUnnamedAnnot()

Get the commonly used symbol representing a unnnamed annotation.

string m_Descr

annotation description (or comment)

static bool IsGeneModelFeature(int type, int subtype)

Does feature belong to gene model track Gene, RNA, cdregion, exon, C_region, and VDJ segments.

static bool IsUnnamed(const string &annot)

check if a given annotation is a unnamed annotation.

string m_Title

annotation title

#define EXT_POINT__NONASN_TRACK_DATA_FACTORY

static TAnnotNameType NameTypeStrToValue(const string &type)

EAnnotationNameType

flags for classifying annotation names.

@ eAnnot_Unnamed

unnamed annotation

@ eAnnot_Other

any given named annots

static const string kStdTrackId

prefix for STD (as opposed to TMS) tracks

void GetExtensionAsInterface(const string &ext_point_id, vector< CIRef< I > > &interfaces)

GetExtensionAsInterface() is a helper function that extracts all extensions implementing the specifie...

static const string cTrackSettingKey_ErrorShortMsg

if present contains the short error message

static const string cTrackSettingKey_ErrorMsg

if present contains the error message

static const string cTrackSettingKey_ErrorSeverity

if present and set to anything, but CHTMLActiveArea::eErrorSeverity_NoError, do not attempt to load t...

static string RemoveEscape(const string &str)

remove escape characters ('\') used for escaping special characters in track settings values

static const string kRStdTrackId

prefix for Remote STD (as opposed to TMS) tracks

static const string cTrackSettingKey_PrivatePrefix

some internal reserved track setting keys that are used for internal communication always start with ...

TErrorSeverity m_ErrorSeverity

static void TokenizeWithEscape(const string &str, const string &delim, vector< string > &tokens, bool remove_escape=false)

Tokenize a string using the delim.

static const string cTrackSettingKey_ErrorCode

if present contains the error code

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

CRef< C > Ref(C *object)

Helper functions to get CRef<> and CConstRef<> objects.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool StringToBool(const CTempString str)

Convert string to bool.

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static bool EndsWith(const CTempString str, const CTempString end, ECase use_case=eCase)

Check if a string ends with a specified suffix value.

static string Join(const TContainer &arr, const CTempString &delim)

Join strings using the specified delimiter.

static string & Replace(const string &src, const string &search, const string &replace, string &dst, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

static string TruncateSpaces(const string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string.

static string & ToLower(string &str)

Convert string to lower case – string& version.

@ eNocase

Case insensitive compare.

const string & GetHost(void) const

static const char label[]

bool IsSetLegend_text(void) const

Check if a value has been assigned to Legend_text data member.

bool IsSetHelp(void) const

Check if a value has been assigned to Help data member.

bool IsSetOptional(void) const

Check if a value has been assigned to Optional data member.

const TName & GetName(void) const

Get the Name member data.

const TCurr_value & GetCurr_value(void) const

Get the Curr_value member data.

bool IsSetOptional(void) const

Check if a value has been assigned to Optional data member.

TOptions & SetOptions(void)

Assign a value to Options data member.

bool IsSetOptional(void) const

Check if a value has been assigned to Optional data member.

TOptional GetOptional(void) const

Get the Optional member data.

TOptional GetOptional(void) const

Get the Optional member data.

list< CRef< CDisplayOption > > TOptions

TOptional GetOptional(void) const

Get the Optional member data.

const TConditions & GetConditions(void) const

Get the Conditions member data.

const TValue & GetValue(void) const

Get the Value member data.

list< CRef< CDisplayOptionValue > > TValues

const Tdata & Get(void) const

Get the member data.

bool IsSetDisplay_name(void) const

Check if a value has been assigned to Display_name data member.

bool IsSetConditions(void) const

Check if a value has been assigned to Conditions data member.

const THelp & GetHelp(void) const

Get the Help member data.

list< CRef< CChoiceItem > > TValues

list< CRef< CTextBox > > TText_boxes

list< CRef< CDisplayTrack > > TTracks

bool IsSetDisplay_name(void) const

Check if a value has been assigned to Display_name data member.

const TName & GetName(void) const

Get the Name member data.

const THelp & GetHelp(void) const

Get the Help member data.

bool IsSetDisplay_name(void) const

Check if a value has been assigned to Display_name data member.

TValue GetValue(void) const

Get the Value member data.

Tdata & Set(void)

Assign a value to data member.

list< CRef< CTrackConfig > > Tdata

const TDisplay_name & GetDisplay_name(void) const

Get the Display_name member data.

bool IsSetHelp(void) const

Check if a value has been assigned to Help data member.

bool IsSetHelp(void) const

Check if a value has been assigned to Help data member.

const TDisplay_name & GetDisplay_name(void) const

Get the Display_name member data.

const TName & GetName(void) const

Get the Name member data.

bool IsSetDisplay_name(void) const

Check if a value has been assigned to Display_name data member.

const TName & GetName(void) const

Get the Name member data.

bool IsSetConditions(void) const

Check if a value has been assigned to Conditions data member.

list< CRef< CChoice > > TChoice_list

list< CRef< CCheckBox > > TCheck_boxes

const TDisplay_name & GetDisplay_name(void) const

Get the Display_name member data.

bool IsSetConditions(void) const

Check if a value has been assigned to Conditions data member.

const TDisplay_name & GetDisplay_name(void) const

Get the Display_name member data.

const TName & GetName(void) const

Get the Name member data.

const TLegend_text & GetLegend_text(void) const

Get the Legend_text member data.

const TConditions & GetConditions(void) const

Get the Conditions member data.

const TConditions & GetConditions(void) const

Get the Conditions member data.

TOptional GetOptional(void) const

Get the Optional member data.

bool IsSetOptional(void) const

Check if a value has been assigned to Optional data member.

const THelp & GetHelp(void) const

Get the Help member data.

bool IsSetHelp(void) const

Check if a value has been assigned to Help data member.

list< CRef< CHiddenSetting > > THidden_settings

TTracks & SetTracks(void)

Assign a value to Tracks data member.

const TValue & GetValue(void) const

Get the Value member data.

const TValues & GetValues(void) const

Get the Values member data.

const THelp & GetHelp(void) const

Get the Help member data.

#define EXT_POINT__SEQGRAPHIC_LAYOUT_TRACK_FACTORY

FeaturePanel uses the following extension point to obtain registered seqgraphic track factories (inst...

if(yy_accept[yy_current_state])

constexpr auto sort(_Init &&init)

constexpr bool empty(list< Ts... >) noexcept

const struct ncbi::grid::netcache::search::fields::KEY key

const struct ncbi::grid::netcache::search::fields::SUBKEY subkey

const GenericPointer< typename T::ValueType > T2 value

void copy(Njn::Matrix< S > *matrix_, const Njn::Matrix< T > &matrix0_)

#define EXT_POINT__PROJECT_ITEM_EXTENSION

#define EXT_POINT__SEQGRAPHIC_DATA_SOURCE_TYPE

ISGDataSourceManager uses the following extension point to obtain registered seqgraphic data source f...

static bool s_CompareCRefs(const CRef< CTempTrackProxy > &t1, const CRef< CTempTrackProxy > &t2)

help struct for storing track settings

TTrackErrorStatus m_ErrorStatus

CSGConfigUtils::TKeyValuePairs TProfile

vector< STrackSettings > TTrackConfig

set< string > m_Options2Show

vector< string > TSubTracks

static void ParseSettings(const CTrackConfigManager::TTrackSettingsSet &settings_set, TTrackConfig &config)

static string CreateProfileString(const TProfile &profile)

set< string > m_Options2Hide

CTrackProxy::TAnnots m_Annots

void s_ResolveSubTracks(CTrackConfigManager::TTrackProxies &t_settings)

void s_InitTrackFromSettings(CTrackProxy &track, const STrackSettings &s, int order, bool update_annots=true)

static void s_ParseOptionalSettings(const string &optional_settings, set< string > &options2hide, set< string > &options2show)

static CTrackConfigManager::TTrackProxies::iterator s_FindMatchedTrack(const STrackSettings &src_track, CTrackConfigManager::TTrackProxies &track_list)

Helper function to find a matched track from a list of tracks for a given source track.

static bool s_IsStdTrack(const string &track_id)

static bool s_TrackMatch(const STrackSettings &src_track, const CTempTrackProxy &target_track, bool exact_annot_match=true)

The matching logic is 'vague' due to the fact that the user-provided 'tracks' may be ambiguous.

static void s_ParseSubTrackId(const string &subtrack_id, string &track_id, string &track_attr)

void s_ProcessOptionalSettings(CTempTrackProxy &temp_proxy, CTrackConfig &config)

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