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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/trace__graph__track_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/seq_graphic/trace_graph_track.cpp Source File

74  "DNA Sequencing Chromatograms"

);

148  if

(iter->second ==

"curve"

)

150  else if

(iter->second ==

"intensity"

)

157

}

catch

(std::exception&) {

158  LOG_POST

(

Error

<<

"CTraceGraphTrack::x_LoadSettings: invalid settings " 176

?

"curve"

:

"intensity"

;

185  if

(

SetGroup

().GetChildrenNum() == 0) {

246  config

->SetLegend_text(

"anchor_13"

);

247  string

style =

"curve"

;

248  string

show_conf_graph =

"true"

;

253  config

->SetHidden_settings().push_back

256  config

->SetHidden_settings().push_back

259  config

->SetHidden_settings().push_back

262  config

->SetHidden_settings().push_back

265  config

->SetHidden_settings().push_back

268  config

->SetHidden_settings().push_back

271  config

->SetHidden_settings().push_back

274

style = iter->second;

276

show_conf_graph = iter->second;

278

}

catch

(std::exception&) {

279  LOG_POST

(

Error

<<

"CTraceGraphTrack::GetSettings: invalid settings " 286  "Trace Chromatogram style"

,

288  "Trace Chromatogram style"

);

289

choice->SetValues().push_back

293  "Shown as Signal Traces"

,

294  "Trace data shown as graph"

));

295

choice->SetValues().push_back(

299  "Shown as intensity bands"

,

300  "Trace data shown as intensity bands"

));

301  config

->SetChoice_list().push_back(choice);

304  "show_conf_graph"

,

"Show Confidence Graph"

,

""

,

""

,

344

wxMenuItem* item_style = 0;

346

item_style = menu.AppendCheckItem(id_base,

wxT

(

"Show Intensity Graph"

));

348

item_style = menu.AppendCheckItem(id_base,

wxT

(

"Show Signal Graph"

));

350

wxMenuItem* item_conf_graph = menu.AppendCheckItem(id_base + 1,

wxT

(

"Show Confidence Graph"

));

352

item_conf_graph->Check();

355  if

(item_style->IsChecked()) {

User-defined methods of the data storage class.

CAppJobNotification Notification send by CAppJobEventTranslator.

CDataTrack - a abstract base class for layout tracks which need to deal with background data retrieva...

virtual void x_UpdateBoundingBox()

Update the bounding box assuming children's sizes are fixed if any.

virtual void x_RenderContent() const

The content rendering must be implemented in the derived layout tracks.

virtual void GetHTMLActiveAreas(TAreaVector *p_areas) const

Get html active areas.

CLayoutGroup & SetGroup()

CRef< CSimpleLayout > m_Simple

void SetLayoutPolicy(ILayoutPolicy *policy)

Set policy on how to deploy the layout of its children.

void PushBack(CSeqGlyph *obj)

Append a layout object to the end.

void SetTitle(const string &label, const string &default_title=NcbiEmptyString)

@ eIcon_Settings

icon id for track settings

ILayoutTrackHost * m_LTHost

Top level host owning the tracks.

virtual void x_OnIconClicked(TIconID id)

Mouse left-click event handler on an icon.

void SetProfile(const string &preset_style)

CLayoutTrack inline method implmentation.

int TIconID

use int as TIconID instead of EIconID.

virtual CHTMLActiveArea * InitHTMLActiveArea(TAreaVector *p_areas) const

Initialize the HTML active area for a track.

void x_RegisterIcon(const SIconInfo &icon)

register track icons.

CRenderingContext offers the basic context and utility methods for rendering layout objects in featur...

TModelRange IntersectVisible(const CSeqGlyph *obj) const

static string ComposeProfileString(const TKeyValuePairs &settings)

void SetJobListener(CEventHandler *listener)

Set JobDispatcher listener.

const string & GetTitle() const

CRef< CSGTraceData > GetData() const

Sequence related information.

CRenderingContext * m_Context

the rendering context

virtual TModelUnit GetHeight() const

vector< CHTMLActiveArea > TAreaVector

ESingnalStyle m_SignalStyle

CRgbaColor m_colorConfMax

EGraphState m_ConfGraphState

array< CRgbaColor, 4 > m_colors

CRgbaColor m_colorConfMin

virtual string GetExtensionIdentifier() const

returns the unique human-readable identifier for the extension the id should use lowercase letters se...

virtual TTrackMap CreateTracks(SConstScopedObject &object, ISGDataSourceContext *ds_context, CRenderingContext *r_cntx, const SExtraParams &params=SExtraParams(), const TAnnotMetaDataList &src_annots=TAnnotMetaDataList()) const

create a layout track based on the input objects and extra parameters.

virtual CRef< objects::CTrackConfigSet > GetSettings(const string &profile, const TKeyValuePairs &settings, const CTempTrackProxy *track_proxy) const

virtual const CTrackTypeInfo & GetThisTypeInfo() const

virtual string GetExtensionLabel() const

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

virtual void GetHTMLActiveAreas(TAreaVector *p_areas) const

Get html active areas.

virtual void x_RenderContent() const

The content rendering must be implemented in the derived layout tracks.

CRef< CSGTraceGraphDS > m_DS

void x_OnSettingsIconClicked()

virtual ~CTraceGraphTrack()

virtual void x_UpdateData()

update track content.

virtual CHTMLActiveArea * InitHTMLActiveArea(TAreaVector *p_areas) const

Initialize the HTML active area for a track.

virtual const CTrackTypeInfo & GetTypeInfo() const

virtual void x_SaveSettings(const string &preset_style)

save part of settings to a profile string.

virtual void x_OnIconClicked(TIconID id)

Mouse left-click event handler on an icon.

virtual CRef< CSGGenBankDS > GetDataSource()

Method for accessing the data source.

virtual void x_UpdateBoundingBox()

Update the bounding box assuming children's sizes are fixed if any.

virtual void x_OnJobCompleted(CAppJobNotification &notify)

virtual void x_LoadSettings(const string &preset_style, const TKeyValuePairs &settings)

load the track settings.

CRef< CTraceGraphConfig > m_Config

static CTrackTypeInfo m_TypeInfo

CTraceGraphTrack(CSGTraceGraphDS *ds, CRenderingContext *r_cntx)

static CRef< objects::CChoice > CreateChoice(const string &name, const string &disp_name, const string &curr_val, const string &help, bool optional=false)

static CRef< objects::CHiddenSetting > CreateHiddenSetting(const string &name, const string &value)

static CRef< objects::CCheckBox > CreateCheckBox(const string &name, const string &disp_n, const string &help_text, const string &legend_txt, bool value, bool optional=false)

static CRef< objects::CChoiceItem > CreateChoiceItem(const string &name, const string &disp_name, const string &help, const string &legend_txt, bool optional=false)

CTrackTypeInfo - holds description of a layout track type.

const string & GetDescr() const

const string & GetId() const

virtual void LTH_PopupMenu(wxMenu *menu)=0

show track-specific context menu.

ISGDSManager is seqgraphic data source manage that serves as an data source context.

virtual CIRef< ISGDataSource > GetDS(const string &type, SConstScopedObject &object)=0

Get a seqgraphic data source instance of the specified type.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

string ToString(bool printAlpha=true, bool uchars=true) const

Return a string representation of the current color.

void FromString(const string &str)

Assign color values encoded in a string.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static int StringToNonNegativeInt(const CTempString str, TStringToNumFlags flags=0)

Convert string to non-negative integer value.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

Tdata & Set(void)

Assign a value to data member.

NetCache ICache client specs.

Reader-writer based streams.

A help struct for storing information about a icon.

static const string kDefaultAnnotName

CTraceGraphTrack.

void UseDefaultMarginWidth(wxMenu &menu)

Using default menu item margin width.


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