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NCBI C++ ToolKit: src/gui/widgets/seq_graphic/trace_graph_ds.cpp Source File

* raw_graphs[5] = { 0, 0, 0, 0, 0 };

chgr_handle =

.GetScope().GetBioseqHandle(trace_chgr_id);

= it->second;

raw_graphs[

+ 1] = &graph;

(

graph_iter(chgr_handle, sel); graph_iter; ++graph_iter) {

& graph = graph_iter->GetOriginalGraph();

= it->second;

raw_graphs[

+ 1] = &graph;

= 0, sig_len = 0;

b_conf = raw_graphs[0] !=

;

= (

)values.size();

(;

< 5 && raw_graphs[

] ==

;

++) {};

b_ch = (

< 5);

= raw_graphs[

]->

();

sig_len = (

)values.size();

p_data->

(0,

- 1, sig_len);

(

= 0;

<

;

++) {

(

= 1;

< 5 && b_ch;

++) {

b_calc_pos =

;

(raw_graphs[

]) {

(

j = 0; j < sig_len; j++) {

positions[j] = K_pos * j;

(

j = 0; j < sig_len; j++) {

data_values[j] = K * ((

char)values[j]);

&

=

&

(

.object.GetObject());

sid(

);

slabel(

);

(to >= from && samples >= 0);

vector<TConfidence>::const_iterator it = max_element(

.begin(),

.end());

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

objects::CBioseq_Handle m_Handle

TValues & GetValues(EChannel signal)

vector< TSignalValue > TValues

vector< TFloatSeqPos > TPositions

TConfidence GetMaxConfidence() const

TPositions & GetPositions()

TSignalValue GetMax(EChannel signal) const

void SetConfidence(TSignedSeqPos pos, TConfidence conf)

vector< TConfidence > m_Confs

void Init(TSignedSeqPos from, TSignedSeqPos to, int samples)

CSGTraceData.

TConfidence m_MaxConfidence

void SetTitle(const string &title)

TSignedSeqPos GetSeqLength() const

virtual bool IsSharable() const

check if the data source can be shared.

virtual ISGDataSource * CreateDS(SConstScopedObject &object) const

create an instance of the layout track type using default settings.

virtual string GetExtensionIdentifier() const

returns the unique human-readable identifier for the extension the id should use lowercase letters se...

virtual string GetExtensionLabel() const

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

CSGTraceGraphDS(objects::CScope &scope, const objects::CSeq_id &id)

CRef< CSGTraceData > m_Data

const_iterator end() const

const_iterator find(const key_type &key) const

int TSignedSeqPos

Type for signed sequence position.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

static objects::SAnnotSelector GetAnnotSelector(TAnnotFlags flags=0)

request an annotation selector for a given type

SAnnotSelector & SetSearchExternal(const CTSE_Handle &tse)

Set all flags for searching standard GenBank external annotations.

const CSeq_graph & GetOriginalGraph(void) const

Get original graph with unmapped location/product.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

const TTag & GetTag(void) const

Get the Tag member data.

bool IsId(void) const

Check if variant Id is selected.

const TDb & GetDb(void) const

Get the Db member data.

TId GetId(void) const

Get the variant data.

bool IsGeneral(void) const

Check if variant General is selected.

const TGeneral & GetGeneral(void) const

Get the variant data.

const TGraph & GetGraph(void) const

Get the Graph member data.

const TTitle & GetTitle(void) const

Get the Title member data.

bool CanGetTitle(void) const

Check if it is safe to call GetTitle method.

const TByte & GetByte(void) const

Get the variant data.

bool CanGetLoc(void) const

Check if it is safe to call GetLoc method.

const TValues & GetValues(void) const

Get the Values member data.

E_Choice Which(void) const

Which variant is currently selected.

TA GetA(void) const

Get the A member data.

const TTitle & GetTitle(void) const

Get the variant data.

@ e_Title

a title for this sequence

unsigned int

A callback function used to compare two keys in a database.

static map< string, int > sm_TitleToType

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