Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/trace__data_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/aln_multiple/trace_data.cpp Source File

m_bNegativeStrand(b_neg_strand),

* raw_graphs[5] = { 0, 0, 0, 0, 0 };

chgr_handle =

.GetScope().GetBioseqHandle(trace_chgr_id);

= it->second;

raw_graphs[

+ 1] = &graph;

(

graph_iter(chgr_handle, sel); graph_iter; ++graph_iter ) {

& graph = graph_iter->GetOriginalGraph();

= it->second;

raw_graphs[

+ 1] = &graph;

= 0, sig_len = 0;

b_conf = raw_graphs[0] !=

;

= (

) values.size();

( ;

< 5 && raw_graphs[

] ==

;

++ ) {};

b_ch = (

< 5);

= raw_graphs[

]->

();

sig_len = (

) values.size();

(

= 0;

<

;

++ ) {

(

= 1 ;

< 5 && b_ch;

++) {

b_calc_pos =

;

(raw_graphs[

]) {

(

j = 0; j < sig_len; j++ ) {

positions[j] = K_pos * j;

(

j = 0; j < sig_len; j++ ) {

data_values[j] = K * ((

char) values[j]);

(to >= from && samples >= 0);

vector<TConfidence>::const_iterator it = max_element(

.begin(),

.end());

User-defined methods of the data storage class.

CTraceDataProxy(const objects::CBioseq_Handle &handle, bool b_neg_strand)

CTraceDataProxy.

const objects::CBioseq_Handle & m_Handle

bool m_bNegativeStrand

handle to Bioseq with traces

TTitleToType m_TitleToType

void Init(TSignedSeqPos from, TSignedSeqPos to, int samples, bool negative)

CTraceData.

TSignalValue GetMax(EChannel signal) const

TConfidence m_MaxConfidence

TValues & GetValues(EChannel signal)

TConfidence GetMaxConfidence() const

vector< TConfidence > m_Confs

TPositions & GetPositions()

vector< TFloatSeqPos > TPositions

vector< TSignalValue > TValues

TSignedSeqPos GetSeqLength() const

void SetConfidence(TSignedSeqPos pos, TConfidence conf)

container_type::iterator iterator

const_iterator end() const

const_iterator find(const key_type &key) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

int TSignedSeqPos

Type for signed sequence position.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

static objects::SAnnotSelector GetAnnotSelector(TAnnotFlags flags=0)

request an annotation selector for a given type

SAnnotSelector & SetSearchExternal(const CTSE_Handle &tse)

Set all flags for searching standard GenBank external annotations.

const CSeq_graph & GetOriginalGraph(void) const

Get original graph with unmapped location/product.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

const TTag & GetTag(void) const

Get the Tag member data.

bool IsId(void) const

Check if variant Id is selected.

const TDb & GetDb(void) const

Get the Db member data.

TId GetId(void) const

Get the variant data.

bool IsGeneral(void) const

Check if variant General is selected.

const TGeneral & GetGeneral(void) const

Get the variant data.

const TGraph & GetGraph(void) const

Get the Graph member data.

const TTitle & GetTitle(void) const

Get the Title member data.

bool CanGetTitle(void) const

Check if it is safe to call GetTitle method.

const TByte & GetByte(void) const

Get the variant data.

bool CanGetLoc(void) const

Check if it is safe to call GetLoc method.

const TValues & GetValues(void) const

Get the Values member data.

E_Choice Which(void) const

Which variant is currently selected.

TA GetA(void) const

Get the A member data.

unsigned int

A callback function used to compare two keys in a database.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4