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NCBI C++ ToolKit: src/algo/structure/threader/thrdcpll.c Source File

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97 for

(

i

=0;

i

<nmt;

i

++) cf[

i

]=(-1);

100 for

(

i

=0;

i

<nsc;

i

++) {

113  la

=(

i

==(nsc-1)) ? nqi-1-cdf->

lll

.

llmn

[nsc]:

122  for

(j=mn; j<=mx; j++) cf[j]=

i

; }

129 for

(

i

=0;

i

<nsc;

i

++) { cl=cpl[

i

]; cl->

rr

.

n

=0; cl->

rp

.

n

=0; cl->

rf

.

n

=0;}

134 for

(

i

=0;

i

<nsc;

i

++ ) {

140  for

(j=0; j<cr->

rr

.

n

; j++) {

160

cl->

rr

.

e

[k]=pmf->

rrt

[d][t1][t2];

169  for

(j=0; j<cr->

rp

.

n

; j++) {

187

cl->

rp

.

e

[k]=pmf->

rrt

[d][t1][ppi];

195  for

(j=0; j<cr->

rf

.

n

; j++) {

211

cl->

rf

.

e

[k]=pmf->

rrt

[d][t1][t2];

bool le(T x_, T y_, T round_)

static const sljit_gpr r1

static SLJIT_INLINE sljit_ins la(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

static const sljit_gpr r2

void cpll(Cor_Def *cdf, Rcx_Ptl *pmf, Qry_Seq *qsq, Cxl_Los **cpr, Cur_Aln *sai, Cxl_Los **cpl)

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