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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/text__item__seq__loc_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/object_list/text_item_seq_loc.cpp Source File

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objects::CSeq_loc* seq_loc =

objects::CSeq_loc*

(

.object.GetPointerOrNull());

* scope =

.scope;

seq_loc->GetTotalRange().GetFrom(),

seq_loc->GetTotalRange().GetLength(),

( ; segI; ++segI ) {

}

(

exception&) {

(group->GetItemCount() > 1) {

CRef< objects::CScope > m_Scope

CConstRef< CObject > m_Object

void WriteMultiLineText(const string &text)

CTextItemSeq_loc(SConstScopedObject &object, EMode mode, int indent)

static ITextItem * CreateObject(SConstScopedObject &object, EMode mode, ICanceled *cancel=0)

virtual void x_RenderText(CStyledTextOStream &ostream, CTextPanelContext *context) const

virtual void x_Indent(CStyledTextOStream &ostream) const

Interface for testing cancellation request in a long lasting operation.

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

CConstRef< CSeq_id > GetSeqId(void) const

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

const CSeqMap & GetSeqMap(void) const

Get sequence map.

TSeqPos GetRefPosition(void) const

bool GetRefMinusStrand(void) const

CSeqMap::ESegmentType GetType(void) const

CSeq_id_Handle GetRefSeqid(void) const

The following function makes sense only when the segment is a reference to another seq.

TSeqPos GetRefEndPosition(void) const

CSeqMap_CI ResolvedRangeIterator(CScope *scope, TSeqPos from, TSeqPos length, ENa_strand strand=eNa_strand_plus, size_t maxResolve=size_t(-1), TFlags flags=fDefaultFlags) const

Iterate segments in the range with specified strand coordinates.

@ eSeqRef

reference to Bioseq

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

virtual bool IsCanceled(void) const =0

static void text(MDB_val *v)

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