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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/text__item__seq__align_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/object_list/text_item_seq_align.cpp Source File

(!

.empty()) {

ostream <<

;

( ; id_iter; ++id_iter ){

( id_set.

(idh).second ){

(!

.empty()) {

(id_set.

() == 2) {

objects::CSeq_align* seq_align =

<<

(255,0,0,255,255,255,wxTRANSPARENT,

,

)

<<

;

CRef< objects::CScope > m_Scope

CConstRef< CObject > m_Object

void WriteMultiLineText(const string &text)

CTextItemSeq_align(SConstScopedObject &object, EMode mode)

static ITextItem * CreateObject(SConstScopedObject &object, EMode mode)

virtual void x_RenderText(CStyledTextOStream &ostream, CTextPanelContext *context) const

virtual void x_Indent(CStyledTextOStream &ostream) const

Template class for iteration on objects of class C (non-medifiable version)

iterator_bool insert(const value_type &val)

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

void GetLabel(string *label, ELabelType type=eDefault, TLabelFlags flags=fLabel_Default) const

Append a label for this Seq-id to the supplied string.

CConstRef< CSeq_id > GetSeqId(void) const

static CSeq_id_Handle GetHandle(const CSeq_id &id)

Normal way of getting a handle, works for any seq-id.

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

@ eGetId_Best

return the "best" gi (uses FindBestScore(), with CSeq_id::CalculateScore() as the score function

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static const char label[]

E_Choice Which(void) const

Which variant is currently selected.

list< CRef< CSeq_align > > Tdata

const TDisc & GetDisc(void) const

Get the variant data.

const Tdata & Get(void) const

Get the member data.

const TSegs & GetSegs(void) const

Get the Segs member data.

static void text(MDB_val *v)

static void s_Render_SeqAlign(CStyledTextOStream &ostream, const CSeq_align &align, CScope &scope)

static void s_Render_GenericAlign(CStyledTextOStream &ostream, const CSeq_align &align, CScope &scope)

static void s_Render_PairwiseAlign(CStyledTextOStream &ostream, const CSeq_align &align, CScope &scope)

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