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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/tax__tree__ds_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/tax_tree/tax_tree_ds.cpp Source File

, m_Mode(eDisplay_Default)

vector<TTaxId> tax_ids_in;

vector<TTaxId> tax_ids_out;

tax_ids_in.reserve(tax_map.

());

tax_ids_in.push_back(iter->first);

(tax_ids_in.size() == 0) {

);

( !

.GetPopsetJoin(tax_ids_in, tax_ids_out) ) {

);

& seq_id = **iter;

( seq_id.

() ) {

tax_map[tax_id].push_back(*iter);

static CRef< CScope > m_Scope

CTaxTreeDS_ObjMgr(objects::CScope &scope, const TUidVec &ids)

objects::CTaxon1 m_TaxCache

const TUidVec & GetUids() const

objects::ITreeIterator & GetIterator(EDisplayMode mode=eDisplay_Default)

void GetTaxMap(TTaxMap &taxmap)

const CRef< objects::CScope > & GetScope(void)

CRef< objects::ITreeIterator > m_Iter

CRef< objects::CScope > m_Scope

void GetTitle(const objects::CSeq_id &uids, string *title) const

virtual const string & GetName() const =0

iterator_bool insert(const value_type &val)

static const char * str(char *buf, int n)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

SStrictId_Tax::TId TTaxId

Taxon id type.

#define TAX_ID_FROM(T, value)

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

void Info(CExceptionArgs_Base &args)

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

void GetLabel(string *label, ELabelType type=eDefault, TLabelFlags flags=fLabel_Default) const

Append a label for this Seq-id to the supplied string.

CConstRef< CSeq_id > GetSeqId(void) const

@ eContent

Untagged human-readable accession or the like.

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

TTaxId GetTaxId(const CBioseq_Handle &handle)

return the tax-id associated with a given sequence.

@ eGetId_Best

return the "best" gi (uses FindBestScore(), with CSeq_id::CalculateScore() as the score function

TBioseqCore GetBioseqCore(void) const

Get bioseq core structure.

CConstRef< CSeq_id > GetSeqId(void) const

Get id which can be used to access this bioseq handle Throws an exception if none is available.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TGi GetGi(void) const

Get the variant data.

bool IsGi(void) const

Check if variant Gi is selected.

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